Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00250 ATGGAATTCAATGATAACCATGGTTATGAAGCTCAGAATCTCTTTCAGAGGAATAATAATGGCTGCCAAATGCAGAAATTGTTGGAGCTGAAAATCCTAGTCTTAGCCGCTCTGATCTTCTTGCAGTTTCCATCAACTGAAGCTTATGATCCGTTGGATCCGAATGGAAACATAACGATCAAATGGGACATAATTTCTTGGACGCCAGATGGTTACGTAGCTACCGTGACGATGAACAACTTTCAGATGTATCGACATATAATGACTCCCGGATGGACTCTATCCTGGTCATGGGCTAAAAAAGAAGTAATATGGTCAATGGTGGGAGCTCAAACCACAGAGCAAGGAGATTGTTCAAAGTTCAAAGGAAATGTGCCCCATTGCTGTAAGAAAACTCCGACTGTTGTTGATTTGCTTCCAGGCGTTCCATACAATCAACAATTCTCCAATTGCTGTAAAGGCGGTGTTTTGTCGTCTTGGGGTCAGGATCCGATCGCTTCAGTCTCGGCTTTTCAGGTGAGCGTTGGACTGGCCGGGACTTCTAATAAAACAGTGAAACTGCCGAAAAATTTCACTTTGTTCGGTCCCGGACCCGGATATACTTGCGGACCTGCAAAGGTCGTTCCGTCTACGGTTTTCCTCACACCTGATCGGAGACGGAAAACTCAAGCGTTAATGACGTGGAATGTAACATGTACTTATTCGCAATTTTTGTCTTCGAAGAACCCGAGCTGCTGCGTTTCGTTTTCATCTTTTTACAACGATACCATCACTCCTTGCCCGCCTTGTGCATGTGGTTGCCAAATCCAAAAAAATTGTGTCACGAGCTCGAAGCTTGTACACAAGGCGGGTATAAACACTCCTAAAAAGGATAATACGCCTTTACTACAATGCACGCACCACATGTGTCCGATACGTGTTCATTGGCACGTAAAGCTCAACTACAAAGATTATTGGAGGGTGAAAATCGCTATCACGAACTTCAACTATCGATTGAACTACACTCAATGGACACTTGCAGTGCAGCACCCGAATCTTAACAATGTAACCCAAGTATTTAGCTTTGATTACAAGCCACTTGTTCCCTACGAAGCCATTAACGATACTGGCATGTTTTACGGCATGAAATTCTACAATGACTTGTTAATGGAGGCCGGGCCGTCAGGAAATGTGCAGTCTGAGATACTTATGAAGAAGGACGACGAAACGTTTACCTTTAAGCAGGGATGGGCATTTCCTCGGAAAATTTACTTCAACGGAGACGAATGTAAGCTGCCATCGCCCGACGCCTATCCGTTTCTCCCAAACTCAGCCTCGGCAGGATCTATTGCAGTCACAAAAGTGGTGATCTACTTGTTTCTGATGCTGCTCTTCTTATGGTGA 1383 44.4 MEFNDNHGYEAQNLFQRNNNGCQMQKLLELKILVLAALIFLQFPSTEAYDPLDPNGNITIKWDIISWTPDGYVATVTMNNFQMYRHIMTPGWTLSWSWAKKEVIWSMVGAQTTEQGDCSKFKGNVPHCCKKTPTVVDLLPGVPYNQQFSNCCKGGVLSSWGQDPIASVSAFQVSVGLAGTSNKTVKLPKNFTLFGPGPGYTCGPAKVVPSTVFLTPDRRRKTQALMTWNVTCTYSQFLSSKNPSCCVSFSSFYNDTITPCPPCACGCQIQKNCVTSSKLVHKAGINTPKKDNTPLLQCTHHMCPIRVHWHVKLNYKDYWRVKIAITNFNYRLNYTQWTLAVQHPNLNNVTQVFSFDYKPLVPYEAINDTGMFYGMKFYNDLLMEAGPSGNVQSEILMKKDDETFTFKQGWAFPRKIYFNGDECKLPSPDAYPFLPNSASAGSIAVTKVVIYLFLMLLFLW 460
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3113739 3115988 - Bma027266.1 Bma08g00250 87077
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00250 460 Pfam COBRA-like protein 72 235 IPR006918 GO:0010215|GO:0031225
Bma08g00250 460 PIRSF COBRA 22 460 IPR006918 GO:0010215|GO:0031225
Bma08g00250 460 PANTHER PROTEIN COBRA 29 457 IPR006918 GO:0010215|GO:0031225
Bma08g00250 460 PANTHER COBRA-LIKE PROTEIN 29 457 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00250 Bma12g00957 CCT
Bma08g00250 Bma12g00957 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00929 Bma-Chr5:47184372 Bma08g00250 Bma-Chr8:3113739 1.54E-159 dispersed
Bma08g00250 Bma-Chr8:3113739 Bma12g00957 Bma-Chr12:41509154 0 dispersed
Bma08g00250 Bma-Chr8:3113739 Bma13g00189 Bma-Chr13:2230022 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00250 - - cmo:103494059 814.683