Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00251 ATGGGTTGGGCAATCGCTCTACACGGTGGCGCCGGCGATATTCCGCGATCATTGCCGCCCGACCGCCGGTTGCCGCGCGAGGAAGCCCTTCGCCACTGTCTTCAGATTGGAGTTGAAGCTCTCGAAGCCCAAAAGTCTCCGTTGGATGTCGTTGAACTCGTGGTTAGGGAGCTGGAAAATAACCCTCATTTTAATGCCGGTAGAGGTTCTGTCTTGACCAACGATGGTTCAGTGGAAATGGAAGCTAGTATCATGGATGGTATGACAAAGAGATGTGGAGCTGTTTCTGGACTGACCACGGTTGTTAATGCTGTGTCTCTGGCAAGACTGGTCATGGAGAAGACTCCTCATATATATCTTGGATTTGCTGGAGCTGAGGCTTTTGCTCGACAACAAGGGGTTGAGACTGTAGACCCTAGTTACTTTATCACTCCACAGAATATTGAACGGCTACAGCAGGCAAAAGAGGCCAACAGAGTGCAGATAGATTACACACAACCAACTTCTCGAGATCTTAAAATTGAAGCACAAGCTGCCTCCGGCGATAGTCAAATTGGGACGGTCGGGTGTGTGGCTGTTGACGGTCAAGGGAATTTGGCGGCAGCAACTTCTACGGGCGGATTAGTGAACAAAATGGTCGGTAGAATTGGCGACACGCCCATTATAGGAGCCGGGACGTATGCCAACAATCTTTGTGCAGTGTCTGCTACGGGCAGAGGCGAAGCTATTATCCGAGGTACGGTTGCAAGAGATGTCGCGGCTCTAATGGAGTTCAAGTCTCTGTCTCTCAAGGAAGCAGCTGCTTATGTTGTGGAGCAGAGTGTTCCGAAAGGCAGTGTCGGTTTAATTGCTGTATCTGCGACCGGAGAAGTCGCCATGCCTTTCAACACAACTGGTATGTTCAGAGCTTGTGCTACTGAAGATGGATTTTCAGAAATTGCCATTTGGCCTTCTCTTTAG 960 49.9 MGWAIALHGGAGDIPRSLPPDRRLPREEALRHCLQIGVEALEAQKSPLDVVELVVRELENNPHFNAGRGSVLTNDGSVEMEASIMDGMTKRCGAVSGLTTVVNAVSLARLVMEKTPHIYLGFAGAEAFARQQGVETVDPSYFITPQNIERLQQAKEANRVQIDYTQPTSRDLKIEAQAASGDSQIGTVGCVAVDGQGNLAAATSTGGLVNKMVGRIGDTPIIGAGTYANNLCAVSATGRGEAIIRGTVARDVAALMEFKSLSLKEAAAYVVEQSVPKGSVGLIAVSATGEVAMPFNTTGMFRACATEDGFSEIAIWPSL 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3158084 3159755 - Bma027267.1 Bma08g00251 87078

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00251 319 Coils Coil 318 319 - -
Bma08g00251 319 CDD Asparaginase_2 4 309 - -
Bma08g00251 319 PANTHER L-ASPARAGINASE 1 316 IPR000246 GO:0016787
Bma08g00251 319 PANTHER ISOASPARTYL PEPTIDASE/L-ASPARAGINASE 1 316 - -
Bma08g00251 319 Gene3D (Glycosyl)asparaginase 187 319 - -
Bma08g00251 319 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 3 316 IPR029055 -
Bma08g00251 319 Pfam Asparaginase 3 316 IPR000246 GO:0016787
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00251 K13051 ASRGL1, iaaA; L-asparaginase / beta-aspartyl-peptidase [EC:3.5.1.1 3.4.19.5] - qsu:112028955 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02261 Bma-Chr1:79789990 Bma08g00251 Bma-Chr8:3158084 2.23E-131 dispersed
Bma06g01209 Bma-Chr6:49222398 Bma08g00251 Bma-Chr8:3158084 7.04E-11 dispersed
Bma08g00251 Bma-Chr8:3158084 Bma12g01172 Bma-Chr12:44541907 3.12E-14 dispersed
Bma08g00251 Bma-Chr8:3158084 Bma04g00151 Bma-Chr4:1314896 3.52E-133 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g428 . . . Bda15g00633 Bpe12g00515 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00251 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012222 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 0 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00251 Bma_Chr08 FPKM 8.483584 10.103144 16.222652 17.518797 22.441864 22.693769 18.594568 27.631433 31.262245 29.690193