Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00253 ATGGAAGAAGACGATCAGAAAGAGCTTCAGCTCCTTCCCACGCTTTCATCCTCCATGCCCTCTTGGGCGCTCCGATCAACAGCTTCCGATCATCCCTTCGACGGCCCCTCCCTCGACCTCCAATTATCAATCAGTCTAGGTACGATTTCGGAGAGTAGCTGCCTCGAGGCCTTGAAATGGCAGGCGGCCGAGCAAATACGGCTGGCGGCGATGGAGAAAGCGTATGTGGAGAGATTGAGGGAGCTGACGAGGAGAGAGATGGAGTTGGCTCAGTCAGAATTTGCTCGGGCCCGACTCATGTGGGAGCGCGCCCGAGCTGAGGTCGAGAAGGCGGAGCGGATGAAGGAGAGGGCGATCAAGCAATTAGACTCGACCTGCATGGAGATCAATTGCCAATCGTGTAGGCAAATGTTCCAACCTTGA 423 55.56 MEEDDQKELQLLPTLSSSMPSWALRSTASDHPFDGPSLDLQLSISLGTISESSCLEALKWQAAEQIRLAAMEKAYVERLRELTRREMELAQSEFARARLMWERARAEVEKAERMKERAIKQLDSTCMEINCQSCRQMFQP 140
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3228300 3228722 - Bma027270.1 Bma08g00253 87080

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00253 140 Coils Coil 101 128 - -
Bma08g00253 140 PANTHER OS03G0310200 PROTEIN 1 140 - -
Bma08g00253 140 PANTHER OS03G0310200 PROTEIN 1 140 IPR039288 GO:0009630
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00253 - - - vvi:100242196 169.859
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00253 Bma12g00945 CCT
Bma08g00253 Bma12g01082 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00253 Bma-Chr8:3228300 Bma12g01274 Bma-Chr12:45750425 2.74E-15 dispersed
Bma09g00636 Bma-Chr9:43746188 Bma08g00253 Bma-Chr8:3228300 5.32E-99 transposed
Bma12g01082 Bma-Chr12:43118488 Bma08g00253 Bma-Chr8:3228300 8.38E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g106 . . Bda06g00726 . Bpe12g00480 . . Bma12g01082 . . Cma10g00061 Cma11g00032 Car10g00048 Car11g00030 . . Cpe04g01616 Bhi02g00518 . . . . . . Cla06g01742 Cam06g1932 Cec06g1982 Cco06g1986 Clacu06g1888 Cmu06g1830 Cre06g2645 . . Cone13ag0222 Cone19ag0208 . . . . . Blo15g00207 . . Bpe07g00891 . . Bma08g00253 . Cmo10g00055 Cmo11g00034 . . . . . Cpe18g00905 . . . . . . . . . . . . . . Lsi06g01642 Csa01g00055 Chy02g02663 Cme02g02066
Vvi17g379 . . Bda06g00496 . . . . Bma12g00945 . . Cma10g00258 . Car10g00243 . . . . Bhi02g00015 . . . . . . Cla06g01495 Cam06g1649 Cec06g1709 Cco06g1707 Clacu06g1615 Cmu06g1564 Cre06g2376 . . Cone13ag0006 Cone19ag0005 . . . . . Blo15g00357 . . Bpe07g00737 . . Bma08g00253 . Cmo10g00275 . . . . . . Cpe18g00737 . . . . . . . . . . . . . . Lsi06g01359 Csa01g00353 Chy02g02390 Cme02g01775
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005292 2 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00253 Bma_Chr08 FPKM 1.22619 0.983304 0.964288 0.701776 1.842251 1.790444 1.268282 0.283366 0.400241 0.168674