Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00274 ATGAAAATCTCAGAGGACGACCCTATCGCCCTGGCGAACCAGCTTCTCAGTGCTCTGCTTGGGGAAATCTCCAACGTCCAAAGCTTCAGAGGCAAATGGTTTATAGTCGGTAGCAAAGTCTCCGATTTCCGTTCTCACCTCTCCGACTTCTCTCAGTACCCTTGCTCTACTTCCAATTCCCTCTTTCTCGATCTTCTTCACTCTATTTCCAATACTCTTGACGACGCCTTATCTCTTGCTAGAAAATGTCAGACTTCCTGTCTCACAGACGGCAAGCTCAAGACTCAGAGCGACATCGATTTCGTCATCGCCACGCTCGATCGGCAAATCGGTGACGCTGATATTTTGATTAAGAGTGGAGTTTTTCTCGATGGCGGTGTTTCTAGCTCTACGTCGAGGAGGGAGGCCGTACGAGCTGAGTCGAGGAATTTGATTACTCGGTTACAGATTGGGACCGCTGAGTCGAAGAACTCGTCTATGGACTCGCTGTTAGGGTTGCTGCGCGAAGACGATAAGAACGTGATGATAGCCGTCGCTCAAGGTGTGGTTCAGATTCTCGTTCGTTTACTCGATTCGACTTCTCTCGATTTGAAAGAAAAGGCCGTCGCTGCGATTTCTAGGATTTCTGTTGTGGATAGTAGCAAGCACGTACTGGTTGCTGAAGGTTTGGTGCTTCTGAATCATTTGCTTAGAGTTCTAGATTCGGGAGGTGGTTTTGCTAAAGAGAAAGCGTGCATTGCGCTCGAGTCTCTGAGCTATACGAAAGAGAATGCTAGAGCGATTGGCTCTAGAGGTGGAATTTCGTCTCTGTTAGAGATTTGCCAGGCCGGAACCCCTGGTTCACAAGCTTCAGCAGCGAGGGTCCTCAGGAACCTCACTGCATTCAATGAAATCAAAGAGAATGTGGTGGAGGAAAATGGGATAATTGTTCTTCTAGGCCTTCTTGGTTCAGGAACAGCGCTTGCTCAGGAAAATGCAATTGGTTGTCTTTGTAATCTGGCTGCAGATGATGACAATTTGAAGATTCTAATTGTCAAGGAAGGTGGAATCGCCTGTTTAAGGAGCATTTGGGGATCATCTCCATCAATTCGGAGCCTTGAAGCGACGGTTGAGTTGTTGAGACATTTGGCCTCGTACCCTGCAACAGCCGAAGTTCTTATCGCTAATGGATTCATAGGCTGCCTTGTGGAAGTACTGAATTCTGGAATCCTGGGTGTACGAATAGCAGCAACTCGAGCTGTCTATGAGCTTGGGTTCTGCACAAAAACTCGAAAAGACATAGGCGAGACTGGATGTATCACACCCTTGATCAAAATGTTAGATGGTAAGGGAAGTGAGGAGAAAGAAGCAGCAGCAAAGGCCTTGTCGAATCTAATGTCTTATGCAGCGAATAGGCGAATATTTCAGAAAGATGAGAGAGGGATAGTGAGTGCAGTTCAGCTTTTAGACCCTTCAGTTCATAATTTGGATAAAAAGTATCCTGTTTCATTATTAGCCTCTCTTGTTGAGTCAAAAAGTTGCAGGAAACAAATGGTTGCGGCTGGTGCTTGTTTATATTTGCAGAAACTTGTTGAATTGGAAGTGGAGGGATCTAAGAAGCTATTAGAAAGCCTTGGTCGTGGTAAGATTTGGGGGGTATTTGCCAGGCCTTAA 1653 46.16 MKISEDDPIALANQLLSALLGEISNVQSFRGKWFIVGSKVSDFRSHLSDFSQYPCSTSNSLFLDLLHSISNTLDDALSLARKCQTSCLTDGKLKTQSDIDFVIATLDRQIGDADILIKSGVFLDGGVSSSTSRREAVRAESRNLITRLQIGTAESKNSSMDSLLGLLREDDKNVMIAVAQGVVQILVRLLDSTSLDLKEKAVAAISRISVVDSSKHVLVAEGLVLLNHLLRVLDSGGGFAKEKACIALESLSYTKENARAIGSRGGISSLLEICQAGTPGSQASAARVLRNLTAFNEIKENVVEENGIIVLLGLLGSGTALAQENAIGCLCNLAADDDNLKILIVKEGGIACLRSIWGSSPSIRSLEATVELLRHLASYPATAEVLIANGFIGCLVEVLNSGILGVRIAATRAVYELGFCTKTRKDIGETGCITPLIKMLDGKGSEEKEAAAKALSNLMSYAANRRIFQKDERGIVSAVQLLDPSVHNLDKKYPVSLLASLVESKSCRKQMVAAGACLYLQKLVELEVEGSKKLLESLGRGKIWGVFARP 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3755903 3757555 - Bma027295.1 Bma08g00274 87101

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00274 550 PANTHER ARMADILLO-TYPE FOLD PROTEIN-RELATED 6 548 - -
Bma08g00274 550 SUPERFAMILY ARM repeat 152 464 IPR016024 -
Bma08g00274 550 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 548 - -
Bma08g00274 550 Pfam Armadillo/beta-catenin-like repeat 296 335 IPR000225 GO:0005515
Bma08g00274 550 Pfam Armadillo/beta-catenin-like repeat 170 209 IPR000225 GO:0005515
Bma08g00274 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 265 307 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 336 378 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 254 294 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 379 419 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 420 460 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 295 335 IPR000225 GO:0005515
Bma08g00274 550 SMART arm_5 170 210 IPR000225 GO:0005515
Bma08g00274 550 Gene3D - 127 382 IPR011989 -
Bma08g00274 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 181 223 IPR000225 GO:0005515
Bma08g00274 550 Gene3D - 383 536 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00274 - - - tcc:18605178 751.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01310 Bma-Chr3:25866185 Bma08g00274 Bma-Chr8:3755903 2.38E-81 dispersed
Bma04g01076 Bma-Chr4:23062712 Bma08g00274 Bma-Chr8:3755903 2.82E-88 dispersed
Bma05g00968 Bma-Chr5:48133339 Bma08g00274 Bma-Chr8:3755903 1.57E-91 dispersed
Bma08g00274 Bma-Chr8:3755903 Bma09g00003 Bma-Chr9:236508 3.72E-17 dispersed
Bma08g00274 Bma-Chr8:3755903 Bma02g01047 Bma-Chr2:52089050 1.70E-102 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g43 . . . Bda15g00690 Bpe12g00464 . . . . Cmo18g00236 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0250 Cone19ag0232 . . . . . Blo15g00195 . . . . . Bma08g00274 . . . . Cma18g00298 . Car18g00246 Cpe09g00945 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003996 1 3 1 1 1 1 2 1 1 1 1 1 2 2 1 2 1 2 2 1 1 1 2 1 1 1 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00274 Bma_Chr08 FPKM 4.984843 4.528661 4.184406 4.788594 7.342844 6.941864 7.959842 4.934389 4.805574 5.132948