Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00275 ATGGAAGGGGAACTCTGCAAAATTCCGGAAATTGTTGCAATATGCAAGAAGTATAAGGCTTACATCTATTTGGACGAGGCTCATAGCATTGGAGCAGTTGGAAAGTCGGGTAGAGGTGTCTATGAGCTATTAGGAGTTGATACGGCTGATGTAGATATCATGATGGGAACATTCACAAAATCATTTGGTTCACAATACATCAGCCGTATTAGGAGTTGA 219 41.1 MEGELCKIPEIVAICKKYKAYIYLDEAHSIGAVGKSGRGVYELLGVDTADVDIMMGTFTKSFGSQYISRIRS 72
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3764609 3765364 + Bma027296.1 Bma08g00275 87102

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00275 72 PANTHER CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE 1 65 - -
Bma08g00275 72 SUPERFAMILY PLP-dependent transferases 1 65 IPR015424 -
Bma08g00275 72 Gene3D - 1 67 IPR015421 GO:0003824
Bma08g00275 72 Pfam Aminotransferase class I and II 1 64 IPR004839 GO:0009058|GO:0030170
Bma08g00275 72 PANTHER LONG CHAIN BASE BIOSYNTHESIS 2A-LIKE PROTEIN 1 65 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00275 K00654 SPT; serine palmitoyltransferase [EC:2.3.1.50] - jre:108999641 127.487
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00275 Bma12g01093 CCT
Bma08g00275 Bma12g01093 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00275 Bma-Chr8:3764609 Bma01g00660 Bma-Chr1:6017630 4.70E-09 dispersed
Bma12g01093 Bma-Chr12:43214675 Bma08g00275 Bma-Chr8:3764609 4.00E-22 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g41 . . Bda06g00713 Bda15g00692 . . . Bma12g01093 . . Cma10g00031 Cma11g00010 Car10g00023 Car11g00010 . . Cpe04g01636 . . . . . . . Cla06g01772 Cam06g1965 Cec06g2016 Cco06g2023 Clacu06g1923 Cmu06g1864 Cre06g2677 . . . Cone19ag0233 . . . . . Blo15g00193 . . Bpe07g00904 . . Bma08g00275 . Cmo10g00028 Cmo11g00009 . . . . . Cpe18g00929 . . . . . . . . . . . . . . Lsi06g01670 Csa01g00020 . Cme02g02099
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0034955 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00275 Bma_Chr08 FPKM 1.064699 1.561545 1.133581 0.823203 3.42163 3.500187 3.002721 1.454251 1.871378 1.528964