Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00280 ATGGCTAGAGTTCTTGTACAGTCAACAAATATACCTGGGCTAGTCTCTGGGCAGAAGGATGGCCTGTTGAGGGGACCTGGAAATACAAAATCGGCTGTCAGAATGATGAGTAGTCTACAGTCGCCTGGATTGGGGATGAGAGGTTTCTCAGGATTAAGGGGTTTTAATGCTTTAGATACCATGGTCAGGCCTGGGCAAGATTTTCATTCCAAAATAGCAATTTCTCTTTCTTCTCGAAGACAAAGAAGGGCCACCAGATGTGTTCCAAAAGCCATGTTTGAGCGATTCACTGAAAAAGCAATTAAAGTTATTATGCTTGCCCAAGAGGAAGCAAGACGACTTGGTCATAATTTTGTCGGTACAGAACAGATCTTATTGGGTCTTATTGGTGAAGGTACTGGTATTGCTGCAAAGGTTCTTAAATCAATGGGAATTAATCTTAAAGATGCACGGGTGGAAGTGGAGAAAATAATTGGACGAGGTAGTGGATTTGTAGCTGTGGAGATTCCGTTCACTCCCCGTGCAAAACGTGTATTGGAGCTCTCGTTGGAGGAGGCTCGCCAACTTGGTCATAATTATATCGGATCTGAGCATTTGCTTCTTGGATTACTTCGTGAGGGTGAGGGTGTTGCAGCCCGTGTTCTTGAAAATTTAGGATATCAAGTTATTCGTATGGTTGGTGAGAGTACGGAGGCTGTTGGTGCCGGTGTTGGAGGAGGAACTAGTGGGAATAAAATGCCAACATTGGAGGAGTATGGAACAAATTTGACAAAGATGGCTGAGGAGGGAAAACTGGACCCTGTTGTTGGAAGGCAACAGCAGATTGAACGTGTAACCCAAATTTTGGGTAGGAGGACAAAAAATAATCCATGTTTGATAGGTGAACCTGGGGTCGGGAAAACAGCAATTGCTGAAGGCCTTGCTCAAAGGATCGCAAATGGGGATGTTCCAGAAACAATAGAAGGAAAGAAGGTCATTACCTTGGACATGGGGCTTCTTGTAGCTGGCACAAAATACCGAGGAGAGTTTGAGGAAAGGTTAAAAAAATTAATGGAAGAGATCAAGCAAAGTGATGAAATAATACTCTTTATAGATGAAGTCCACACATTAATTGGGGCAGGAGCTGCTGAAGGAGCTATTGATGCTGCGAACATATTAAAACCTGCTCTTGCTAGAGGTGAACTGCAGTGTATTGGAGCCACGACACTCGATGAATATAGAAAACACATCGAGAAAGACCCAGCTTTAGAAAGACGATTCCAGCCAGTCAAAGTACCTGAACCAACTGTGGATGAAACCATACAGATTCTGAAAGGGCTTAGGGAGCGCTATGAGATCCACCACAAGCTTCGCTACACGGATGAAGCTCTAGTAGCTGCTGCACATTTGTCGTATCAATATATCAGTGATCGATTTCTGCCTGATAAAGCAATTGACTTGATTGACGAAGCTGGTTCTCGTGTTCGGCTTCGCCATGCACAGGCATGTCATCTTCATCTTAAGCTTGCTCTATCTTTCTTTTATTTTTTTTTCCAGCTACCTGAGGAAGCCAGAGAGCTTGAGAAAGAGCTCAGGCAGATCACCAAAGAAAAGAACGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGATCTGAAGGCACAAATCTCCACTCTTGTGGATAAGGGCAAGGAGATGAGTAAAGCAGAGAGCGAAGCAGCTAATGTAGGCCCTGTTGTGACTGAAGTCGACATTCAGCACATTGTGTCTTCATGGACTGGTATACCGGTCGAAAAAGTGTCAACTGATGAGTCTGATCGACTTCTGAAAATGGAAGAGACCCTTCACAAGAGGGTTATCGGACAGGATGAAGCTGTAAAAGCAATTAGCCGTGCTATTCGCCGAGCTCGTGTTGGACTGAAGAACCCCAATCGTCCAATCGCCAGCTTCATCTTTTCTGGGCCAACTGGTGTCGGGAAATCTGAACTGGCCAAGGCCTTGGCTGCTTACTACTTTGGGTCTGAAGAAGCAATGATTCGGCTTGACATGAGTGAGTTTATGGAAAGGCACACCGTCTCTAAGCTCATTGGATCGCCCCCAGGATATGTAGGCTACACCGAGGGTGGTCAACTGACAGAGGCTGTCAGACGCCGCCCATACACAGTGGTCCTCTTTGATGAGATCGAGAAGGCCCATCCGGACGTCTTCAACATGATGCTCCAAATTCTCGAGGACGGAAGATTGACCGACAGCAAGGGAAGAACTGTCGACTTTAAGAACACTCTTCTCATAATGACGTCAAACGTCGGAAGTAGCGTAATCGAGAAAGGAGGCCGGAGAATAGGATTTGATCTAGATTACGACGAGAAGGACAGCAGCTACAACCGAATCAAGAGCTTAGTGACTGAGGAACTGAAACAATACTTCCGACCAGAGTTTTTGAACAGATTGGACGAGATGATCGTTTTCCGGCAGTTGACGAAGTTGGAGGTGAAAGAGATAGCCGATATAATGCTAAAGGAGGTTTTTGACAGGCTGAAGAGCAAAGAAATCGAACTTCAAGTGACCGAGAGGTTTAGAGATAGAGTGGTGGACGAAGGCTATAACCCGAGCTATGGGGCCCGGCCATTGAGAAGGGCTATAATGAGACTATTGGAGGACAGCATGGCGGAGAAGATGCTGGCCCGGGAGATCAAGGAAGGCGACTCGGTCATTGTGGACGTCGACTCCGACGGCAACGTCACAGTTCTCAACGGCGGCAGTGGGGCTCAGGAATCGTTGGCGGAGTCAATTCCTGTCTAA 2805 46.2 MARVLVQSTNIPGLVSGQKDGLLRGPGNTKSAVRMMSSLQSPGLGMRGFSGLRGFNALDTMVRPGQDFHSKIAISLSSRRQRRATRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGYQVIRMVGESTEAVGAGVGGGTSGNKMPTLEEYGTNLTKMAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPTVDETIQILKGLRERYEIHHKLRYTDEALVAAAHLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQACHLHLKLALSFFYFFFQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMDLKAQISTLVDKGKEMSKAESEAANVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKSKEIELQVTERFRDRVVDEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGGSGAQESLAESIPV 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3794538 3799504 - Bma027301.1 Bma08g00280 87107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00280 934 Gene3D - 827 925 - -
Bma08g00280 934 Gene3D UVR domain 514 570 - -
Bma08g00280 934 CDD AAA 621 769 - -
Bma08g00280 934 ProSiteProfiles Clp repeat (R) domain profile. 93 235 IPR004176 -
Bma08g00280 934 ProSitePatterns Chaperonins clpA/B signature 2. 681 699 IPR028299 -
Bma08g00280 934 ProSitePatterns Chaperonins clpA/B signature 1. 381 393 IPR018368 GO:0005524
Bma08g00280 934 SUPERFAMILY Double Clp-N motif 94 222 IPR036628 -
Bma08g00280 934 Gene3D - 240 428 IPR027417 -
Bma08g00280 934 Coils Coil 340 360 - -
Bma08g00280 934 Pfam Clp amino terminal domain, pathogenicity island component 183 219 IPR004176 -
Bma08g00280 934 Pfam Clp amino terminal domain, pathogenicity island component 107 159 IPR004176 -
Bma08g00280 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 593 IPR027417 -
Bma08g00280 934 Pfam C-terminal, D2-small domain, of ClpB protein 827 907 IPR019489 -
Bma08g00280 934 Pfam AAA lid domain 429 548 IPR041546 -
Bma08g00280 934 CDD AAA 269 421 - -
Bma08g00280 934 PANTHER ATP-DEPENDENT CLP PROTEASE 78 933 - -
Bma08g00280 934 Pfam ATPase family associated with various cellular activities (AAA) 291 407 IPR003959 GO:0005524|GO:0016887
Bma08g00280 934 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 913 IPR027417 -
Bma08g00280 934 Gene3D - 92 234 IPR036628 -
Bma08g00280 934 SMART AAA_5 286 426 IPR003593 -
Bma08g00280 934 SMART AAA_5 647 828 IPR003593 -
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 651 669 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 725 743 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 758 772 IPR001270 GO:0005524
Bma08g00280 934 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 696 714 IPR001270 GO:0005524
Bma08g00280 934 Coils Coil 513 537 - -
Bma08g00280 934 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 78 933 - -
Bma08g00280 934 Pfam AAA domain (Cdc48 subfamily) 646 820 IPR003959 GO:0005524|GO:0016887
Bma08g00280 934 Gene3D - 429 505 - -
Bma08g00280 934 ProSiteProfiles UVR domain profile. 521 556 IPR001943 GO:0005515
Bma08g00280 934 Gene3D - 578 825 IPR027417 -
Bma08g00280 934 SMART ClpB_D2_small_2 827 917 IPR019489 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00280 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - mnt:21388672 1613.2
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00155 Bma08g00280 CCT
Bma03g00847 Bma08g00280 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01266 Bma-Chr1:17142392 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma06g00155 Bma-Chr6:2018170 Bma08g00280 Bma-Chr8:3794538 0 dispersed
Bma08g00280 Bma-Chr8:3794538 Bma10g01160 Bma-Chr10:40061002 1.60E-16 dispersed
Bma08g00280 Bma-Chr8:3794538 Bma03g00847 Bma-Chr3:8104314 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g30 . . . . Bpe12g00459 . . . . . . . . . Sed01g1068 . Cpe04g01638 Bhi02g00620 Tan09g2434 Cmetu06g1260 . Hepe09g0012 . . . . . . . . . . . . . . . . . . . . . . . . Bma08g00280 . . . . . . . . . . . . . . . . . . . . . . . . . Chy02g02702 .
Vvi17g643 Blo04g00788 . . . Bpe12g00459 . Bma06g00155 . Cmo13g01128 . . . . . . Cpe20g00068 . Bhi02g00694 Tan09g2052 Cmetu02g0330 . . . . Cla06g01547 Cam06g1708 Cec06g1768 Cco06g1769 Clacu06g1675 Cmu06g1621 Cre06g2434 Cone2ag0814 Cone16ag0200 . . Lsi02g00111 Csa01g00590 . Cme12g01952 . . Bda11g01719 Bda14g00871 . Bpe15g00585 Bma03g00847 Bma08g00280 Sed08g2114 . . Cma13g01080 . Car13g00917 . . . Bhi08g01100 Tan05g2372 Cmetu12g0960 Lac10g0140 Hepe07g2473 . . Cla04g01163 Cam04g1221 Cec01g1732 Cco01g1778 Clacu04g1248 Cmu04g1227 Cre01g1523 Lsi06g01422 Csa01g00282 Chy02g02452 Cme02g01838
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00280 Bma_Chr08 FPKM 12.255664 12.083357 5.743102 6.459686 20.668495 22.746128 22.701565 6.655165 8.257421 7.729739