Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00281 ATGGCAGAGGAAGACAAAGTGGTATTGCATGGCATGTGGGCTAGTCCTTTTGTGAAGAGAGTAGAAATTGCTCTGAAAATCAAAGGGATCGCCTTTGAGTATGTGGAAGAGGATTTGAAGAACAAAAGTCCGGCGCTTCTCCAATACAACCCTGTTCATAAGAAAGTTCCTGTTCTCGTTCACAACGGAAAACCCATTGCTGAATCGATTGTAATTATCGAGTACGTGGATGAAACCTGGAAGAACAGTCCTCCGCTATTGCCCCAAGATCCCTACAAAAGAGCTCAAATCCGATTCTGGGTTTCCTTTCTGCAGCAACAGCTGTTCGATAAAATGATGGCAACAGCAAAAGCAAAAGGAGAAGCACAGCAGGAAGCTTTAAAGGCAGCAATGGAGCTGCTAAAGGTTTTTGAAGGGGGGTTGAAGGAATTGCTTTCAGACAACACTCGATTTGCAAATGGAAACGAAATAGGGCTTTTGGAGATCACTTTTCTGTCTTTATTTGGGGCTTACAAAGCTCAAGAAGAAGTCTTTGGATACAAGACGATAGACCAAGAACAAACTCCAGTCATTTTCTGCTGGTTGAACGCTGTAATCGAACACCCAATTGTGAAAGAAGTTTCTCTTCCTCATGACAAAGTTGTGGCCTTTTTCCAGGCTTTCAAACAAGGGACCCTGTGA 681 43.32 MAEEDKVVLHGMWASPFVKRVEIALKIKGIAFEYVEEDLKNKSPALLQYNPVHKKVPVLVHNGKPIAESIVIIEYVDETWKNSPPLLPQDPYKRAQIRFWVSFLQQQLFDKMMATAKAKGEAQQEALKAAMELLKVFEGGLKELLSDNTRFANGNEIGLLEITFLSLFGAYKAQEEVFGYKTIDQEQTPVIFCWLNAVIEHPIVKEVSLPHDKVVAFFQAFKQGTL 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3817640 3818482 - Bma027303.1 Bma08g00281 87108

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00281 226 PANTHER GLUTATHIONE S-TRANSFERASE 1 221 - -
Bma08g00281 226 Gene3D Glutaredoxin 1 86 - -
Bma08g00281 226 Gene3D - 87 225 - -
Bma08g00281 226 SUPERFAMILY GST C-terminal domain-like 78 223 IPR036282 -
Bma08g00281 226 Pfam Glutathione S-transferase, N-terminal domain 9 78 IPR004045 -
Bma08g00281 226 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 90 217 IPR010987 -
Bma08g00281 226 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 1 221 IPR045073 -
Bma08g00281 226 CDD GST_C_Tau 91 221 IPR045074 GO:0004364|GO:0006749
Bma08g00281 226 SFLD Main.3: Omega- and Tau-like 3 223 IPR045073 -
Bma08g00281 226 CDD GST_N_Tau 7 80 - -
Bma08g00281 226 SFLD Main (cytGST) 3 223 - -
Bma08g00281 226 SUPERFAMILY Thioredoxin-like 6 108 IPR036249 -
Bma08g00281 226 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00281 K00799 GST, gst; glutathione S-transferase [EC:2.5.1.18] - tcc:18604669 296.589
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00281 Bma12g00979 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00824 Bma-Chr3:7654811 Bma08g00281 Bma-Chr8:3817640 2.82E-109 dispersed
Bma08g00281 Bma-Chr8:3817640 Bma14g01643 Bma-Chr14:34753479 3.22E-59 dispersed
Bma13g00909 Bma-Chr13:39463942 Bma08g00281 Bma-Chr8:3817640 2.98E-46 dispersed
Bma08g00281 Bma-Chr8:3817640 Bma06g00175 Bma-Chr6:2208313 9.72E-97 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g594 . . Bda06g00533 . . . . Bma12g00979 . . . Cma11g00122 . . Sed08g0243 . Cpe04g01478 Bhi02g00292 Tan09g2087 Cmetu02g1591 . Hepe09g0094 . . Cla06g01568 Cam06g1734 Cec06g1794 Cco06g1794 Clacu06g1701 Cmu06g1647 Cre06g2458 . . Cone13ag0067 Cone19ag0068 . . . . . Blo15g00324 . . Bpe07g00769 . . Bma08g00281 . . Cmo11g00190 . . . . . . . . . . . . . . . . . . . . Lsi06g01443 Csa01g00261 Chy02g02474 Cme02g01860
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001282 1 2 2 3 1 3 0 4 4 3 1 4 2 5 2 1 4 1 1 2 3 3 1 6 4 1 2 3 2 4 75
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00281 Bma_Chr08 FPKM 2.678093 3.314779 2.489243 4.221125 4.237144 3.616012 3.964086 2.137101 2.687477 2.597541