Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00283 ATGGGGCGGAAGGAACGACGGGAGAAGAGGCTGCAAGAAATATCGCTTCTCCGGACGATCCCCTATTCCGATCACCAGAGGTGGTGGTCAAAGGAGACCATTGCGGTGGTCACCGGAGGTAATAGAGGGATCGGATTTGAGATTTCCCGACAGCTTGCTATGCATGGACTGAAAGTCATATTGACATCGAGAGACAGCAGTGTCGGCCTCGAGGCAACTAAGGTTTTGCAGGAAGGAGGTCTCGATGTGGCCTTTCATCAACTAGACGTTATCGACCCTCTATCGATCAAGAATTTTGCTGATTGGTTACAGAAAACTTATGGGGGTCTAGATATTCTGGTAAAATTGCTGTTACAAATTGGTATTTCTTACATTTTGCAGATAAATAATGCGGGTGTGAATTTCAATCTTGGATCGGATAATTCTGTTGAATTTTCGAAGAAAGTTATCAAGACCAATTATTTCGGTACGAAAAATGTGATCGATGCTATGATCCCATTGATTAAACCTTCTAGCGCGGGCGGTCGAATTGTTAACATCACCTCCCGATTAGGCAAATTAAATGGCAGACGAAATAAAGTGGAGAACACAAGCCTGAGGGAACAACTCGGCGATGTCGATTTACTTTCGGAGGAACTCATTGATAGCATGGTATGTAACTTTTTAAAGCAAGTAGAAGAAGACACTTGGACATCAGGCGGATGGCCTCTATTGTGCACGGACTACTCGGTTTCGAAGGTTGCAGTCAATGCATATACGAGGTGGAAGGCAAGGATTCTCTCGGATCGACCAGAAGGTCAAAAAATCTTTATCAATTGTTACTGCCCCGGTTGGGTAAAGACTGCCATGACAGGATTTGCCGGGAATATTTCAGCCGTGGAAGGGGCCGACACTGGAGTTTGGCTTGTCTTACTTCCTGACCAGGCAGTGACTCCTTGTGGACACAATTTCTGCCTAAAATGCTTCCAAAAGTGGATTGGACAAGGAAAACAAACCTGCGCAAAATGTCGATGCTTGATTCCTTCCAAAATGGCAAGTCAGCCTCGCATCAATTCTGCTCTCGTAGTTGCCATTCGTATGGCCAAGATGTCAAAGTCAAATGCAACTGGTGATTCTCAAAAAATTTATCATTTTGTACACAATCAGCATAGGCCGGACAAGGCATACACTACAGAGCGAGCCCAGAAAAGTGGGAAGGCCAATGCAGCAAGTGGGAAGATATTTGTTACTATCCCATCTGATCATTTTGGACCCATCCCTGCAGAAAATGATCCTGGAAGAAATCAGGGTGTGCTTGTTGGTGAAACTTGGGAGGACAGGTTGGAGTGTCGACAATGGGGTGCTCACTTTCCTCATGTGGCAGGCATTGCGGGGCAGTCAAACTTTGGTGCACAGTCAGTAGTTCTTTCTGGAGGTTACCAAGATGATGAGGACCATGGAGAGTGGTTTCTCTACACTGGGAGTGGTGGTAGAGACCTTAGTGGCAACAAACGGACGAGCAAGGACCAATCGTTTGACCAGCAATTCGAGAAAATGAATAAAGCACTCAAACTTAGCTGTTTGATGGGTTATCCTGTTAGGGTAGTTAGGTCGCACAAAGAGAAACGCTCTTCATATGCCCCTGAGAAAGGTTTGCGGTATGATGGAGTCTATAGAATTGAGAAATGTTGGCGAAAAGTGGGAGTTCAGGGTTTTAAGGTTTGCAGGTACTTGTTTGTCAGGTGTGACAATGATCCAGCTCCTTGGACTAGTGATGAACATGGAGATCGGCCTAGAGCCTTTCCTGGAATTGCAGAGTTAAAAAAAGCAACGGACATCACAGAGAGGAAGGGAAGTCCTTCGTGGGATTTCAAAGTGGAAGATAATTGCTGGGTGTGGAAGAAACCTCCACCAGCAAGCAAGAAACCAATTGAAATAGAAGGTTCTGATTCAAAAAAGAGATCAATAAGAGCAATCAGGAAAGCTCATAAAATGACTGTTAGAGAAAGATTATTGAAAGAGTTCAGCTGCCTTATATGCAGACAGGTAATGGCTCAGCCCGTGACAACTCCCTGTGCGCATAATTTTTGCAAGGCATGCTTGGAAGCCCGGTTTGCTGACAAGACATTCATGAGAGACAGAAGCAAAGGTGGAAGGACACTTCGGTCCCAAAAGAATATCATGATTTGTCCTTCTTGTCCTTTGGACATCTCTGATTTTCTTCAAAATCCTCAGGTAAATAGGGAGTTACTTGATGTAATCGAAACACTAAAAAGTCAGAATGAAGAAAATGGCAATTCTGCTGATGAGTTATCTGAGGATGAAACTACTGATCAAGAGGAGAGCAAATATAATACTGCCGAGACATCAGAGGTACCAACTAAGGATAATGAAGCCGAGGTGCATCCTAGTGAAGTGACTCCAAAAAGGGTTCAAAAGCGAATGAAAATGGATGAAACAGAGACTATCGATGCAGCCAAAAGTGGAGGCGCAGCGGGATTAACTGAAGAATGCAATGGATCAGAAAAGGAAACTGCAAGCAGGAAAGCTAAGGAAGTGATGGATGGAGATAATGGCGATTCTCCGTCTAGTCCTCTCAACATGAAATCCGATGTTGATCTTGAATGA 2607 44.42 MGRKERREKRLQEISLLRTIPYSDHQRWWSKETIAVVTGGNRGIGFEISRQLAMHGLKVILTSRDSSVGLEATKVLQEGGLDVAFHQLDVIDPLSIKNFADWLQKTYGGLDILVKLLLQIGISYILQINNAGVNFNLGSDNSVEFSKKVIKTNYFGTKNVIDAMIPLIKPSSAGGRIVNITSRLGKLNGRRNKVENTSLREQLGDVDLLSEELIDSMVCNFLKQVEEDTWTSGGWPLLCTDYSVSKVAVNAYTRWKARILSDRPEGQKIFINCYCPGWVKTAMTGFAGNISAVEGADTGVWLVLLPDQAVTPCGHNFCLKCFQKWIGQGKQTCAKCRCLIPSKMASQPRINSALVVAIRMAKMSKSNATGDSQKIYHFVHNQHRPDKAYTTERAQKSGKANAASGKIFVTIPSDHFGPIPAENDPGRNQGVLVGETWEDRLECRQWGAHFPHVAGIAGQSNFGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQQFEKMNKALKLSCLMGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWRKVGVQGFKVCRYLFVRCDNDPAPWTSDEHGDRPRAFPGIAELKKATDITERKGSPSWDFKVEDNCWVWKKPPPASKKPIEIEGSDSKKRSIRAIRKAHKMTVRERLLKEFSCLICRQVMAQPVTTPCAHNFCKACLEARFADKTFMRDRSKGGRTLRSQKNIMICPSCPLDISDFLQNPQVNRELLDVIETLKSQNEENGNSADELSEDETTDQEESKYNTAETSEVPTKDNEAEVHPSEVTPKRVQKRMKMDETETIDAAKSGGAAGLTEECNGSEKETASRKAKEVMDGDNGDSPSSPLNMKSDVDLE 868
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3871694 3887374 - Bma027305.1 Bma08g00283 87110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00283 868 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 304 848 IPR045134 -
Bma08g00283 868 SUPERFAMILY PUA domain-like 400 592 IPR015947 -
Bma08g00283 868 Gene3D - 397 593 IPR036987 -
Bma08g00283 868 Pfam short chain dehydrogenase 34 188 IPR002347 -
Bma08g00283 868 ProSitePatterns Zinc finger RING-type signature. 685 694 IPR017907 -
Bma08g00283 868 Pfam RING-type zinc-finger 670 704 IPR027370 -
Bma08g00283 868 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 651 784 IPR013083 -
Bma08g00283 868 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 317 IPR036291 -
Bma08g00283 868 CDD carb_red_PTCR-like_SDR_c 34 325 IPR045313 GO:0016616
Bma08g00283 868 Gene3D - 26 319 - -
Bma08g00283 868 ProSiteProfiles Zinc finger RING-type profile. 310 337 IPR001841 -
Bma08g00283 868 ProSiteProfiles YDG domain profile. 426 574 IPR003105 -
Bma08g00283 868 SUPERFAMILY RING/U-box 663 754 - -
Bma08g00283 868 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 304 848 - -
Bma08g00283 868 Pfam SAD/SRA domain 426 577 IPR003105 -
Bma08g00283 868 MobiDBLite consensus disorder prediction 834 849 - -
Bma08g00283 868 ProSiteProfiles Zinc finger RING-type profile. 670 726 IPR001841 -
Bma08g00283 868 MobiDBLite consensus disorder prediction 786 816 - -
Bma08g00283 868 Pfam Zinc finger, C3HC4 type (RING finger) 309 336 IPR018957 GO:0046872
Bma08g00283 868 SMART G9a_1 421 578 IPR003105 -
Bma08g00283 868 Coils Coil 747 767 - -
Bma08g00283 868 SUPERFAMILY RING/U-box 306 344 - -
Bma08g00283 868 SMART ring_2 298 336 IPR001841 -
Bma08g00283 868 SMART ring_2 670 726 IPR001841 -
Bma08g00283 868 MobiDBLite consensus disorder prediction 752 868 - -
Bma08g00283 868 PRINTS Glucose/ribitol dehydrogenase family signature 267 284 IPR002347 -
Bma08g00283 868 PRINTS Glucose/ribitol dehydrogenase family signature 34 51 IPR002347 -
Bma08g00283 868 PRINTS Glucose/ribitol dehydrogenase family signature 122 133 IPR002347 -
Bma08g00283 868 PRINTS Glucose/ribitol dehydrogenase family signature 242 261 IPR002347 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00283 Bma12g01099 CCT
Bma08g00283 Bma12g01099 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00283 Bma-Chr8:3871694 Bma02g01133 Bma-Chr2:53055573 4.52E-49 dispersed
Bma12g01102 Bma-Chr12:43278464 Bma08g00283 Bma-Chr8:3871694 0 transposed
Bma12g01099 Bma-Chr12:43253364 Bma08g00283 Bma-Chr8:3871694 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00283 K10638 - jre:109003133 815.839