Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00287 ATGGTGAAGGACTTGCCGAGGAAGTGCTCCTGCTGCGGAAACAACGGCCATAATTCGAGGACCTGCAACGGCAATGGAAAGCCCTGTGTGAAGCTGTTTGGCGTTAATATATCGGAAACGAAGGGCAATCAGTCGATCAAAAAAAGCTTTAGCATGGGGAATTTGAAAGCTCGTGGTGATGAAGACCACGAAGAAAACGTCGGTAACGTTAACGGCGATGTTGTCGGAGATGATTCCGGGTACCTCTCCGATGGTCTTATTCATAACAAGAAACGTAAGGATGCGCACGAAAGAAAAAAAGGAATTCCATGGAGTGAGGAAGAACATAGAACATTTCTTGCTGGTTTGAAAAGGCTTGGGAAAGGAAATTGGCGTGAAATAGCAAGAACTTTTGTGACAACTAGAACTCCAACTCAGGTTGCAAGCCATGCACAAAAATACTTTCTCAGACAGGCTGCAAATGATAAGAAGAAACGCAGATCCAGCCTCTTTGACATGCACTTAAAAGAACCGGACTCAGTTCGGAAAACGCCCTCGGTTTTGACTGCCGGAAAGATACCGGAAATCCCATCGGAAGTTAGTGAGAAAGCTCCCATCTCTCCAACACTGGCACTGAAGAACACGACTGACAGTCAACAGCAGGTAAATGCAGCAAAGTTACTAAACAGATTCCCTCATCTTTGCTTGGATAGTTCACCTGTTCTTCCGGTTGGTGCAACGACAGCCTGTTGTCTTCCAAATTATCACCATTTACCTTATCTGGTTGGAGTTCCTGCAAATGTGTCATTCATTCCGGTGATGAACTTTGGGAGACAAGACCTGATTGCCGCATGTGAACCAGTGATTGGCCACTCATCTGGCATCCCTTCTTCACGAAAACCCTTTCCACAGATTAAAACAACTCCTCCTGATCCAGGGCAATCTGAGAAGGATGGCTTGGAGCTCAAAATTGGACAGCCTCAAATCAGTGGTTCCATTATTAGGGTTACATGA 993 45.62 MVKDLPRKCSCCGNNGHNSRTCNGNGKPCVKLFGVNISETKGNQSIKKSFSMGNLKARGDEDHEENVGNVNGDVVGDDSGYLSDGLIHNKKRKDAHERKKGIPWSEEEHRTFLAGLKRLGKGNWREIARTFVTTRTPTQVASHAQKYFLRQAANDKKKRRSSLFDMHLKEPDSVRKTPSVLTAGKIPEIPSEVSEKAPISPTLALKNTTDSQQQVNAAKLLNRFPHLCLDSSPVLPVGATTACCLPNYHHLPYLVGVPANVSFIPVMNFGRQDLIAACEPVIGHSSGIPSSRKPFPQIKTTPPDPGQSEKDGLELKIGQPQISGSIIRVT 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3926033 3928280 - Bma027308.1 Bma08g00287 87114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00287 330 Pfam Myb-like DNA-binding domain 103 148 IPR001005 -
Bma08g00287 330 SMART sant 100 150 IPR001005 -
Bma08g00287 330 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 99 151 IPR006447 GO:0003677
Bma08g00287 330 Gene3D - 102 152 - -
Bma08g00287 330 ProSiteProfiles Myb-like domain profile. 96 148 IPR001005 -
Bma08g00287 330 PANTHER TRANSCRIPTION FACTOR KUA1 1 324 - -
Bma08g00287 330 MobiDBLite consensus disorder prediction 287 323 - -
Bma08g00287 330 CDD SANT 103 148 IPR001005 -
Bma08g00287 330 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 324 - -
Bma08g00287 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 96 152 IPR017930 -
Bma08g00287 330 SUPERFAMILY Homeodomain-like 98 151 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00287 - - - fve:101301055 318.161
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma06g00299 Bma08g00287 CCT
Bma06g00299 Bma08g00287 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00287 Bma-Chr8:3926033 Bma15g00351 Bma-Chr15:3752792 8.82E-48 dispersed
Bma09g00953 Bma-Chr9:48963003 Bma08g00287 Bma-Chr8:3926033 9.71E-22 dispersed
Bma08g00287 Bma-Chr8:3926033 Bma11g00573 Bma-Chr11:8264188 4.09E-48 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g2 . Blo16g00315 . Bda15g00749 . . Bma06g00299 . . . Cma10g00005 . Car10g00003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00240 . Bma08g00287 . Cmo10g00003 . . . . . . Cpe18g00946 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006254 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57728 PF00249 Myb_DNA-binding 5.00E-11 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00287 Bma_Chr08 FPKM 7.004447 8.732852 17.039646 18.429985 13.669109 14.424261 14.891706 6.010576 5.02061 5.805516