Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00293 ATGGCGGATGTAAAGGTGAGCGACGTCGAGACTTTTGCATTCCAGGCTGAGATCAATCAGCTTCTCAGTTTGATCATCAACACTTTTTACAGCAATAAGGAGATTTTCCTTCGTGAATTGATCAGCAACTCCTCTGATGCATTGGACAAGATCAGATATGAGAGCCTTACGGATAAGAGCAAGCTTGATGGTCAACCTGAGCTATTCATTAGAATTGTTCCTGATAAGGTTAACAAGACCCTAACAATCATTGATAGTGGTGTTGGCATGACTAAAGCAGATTTGGTGAACAATTTGGGTACAATTGCAAGGTCGGGAACCAAGGAGTTTATGGAGGCATTGCAGGCTGGGGCGGATGTGAGCATGATTGGCCAATTTGGTGTCGGATTCTACTCAGCCTATTTAGTTGCTGAGAAGGTTGTTGTAACTTCCAAGCATAATGACGACGAGCAGTACGTTTGGGAGTCTCAGGCCGGTGGGTCGTTCACTGTTACTAGGGATGTTAATGGAGAACCGCTCGGTAGGGGCACCAAAATGACCCTTTACCTGAAAGAGGATCAGTTGGAGTATTTGGAGGAGAGAAAGATTAAGGATCTTGTGAAGAAGCACTCCGAATTCATTAGCTACCCAATTGAGCTATGGACAGAGAAATCAACGGAGAAGGAAATCAGTGACGATGAAGATGATGAGCCTAAGAAAGAGGAAGAAGGAGATATTGAGGAAGTAGACGAGGAGAAGGAAACCACATCAAAGAAGAAGAAGAAGATCAAGGAAATTTCTCACGAGTGGCAGGTGATCAACAAGCAGAAACCTATTTGGCTACGCAAACCAGAGGAAATAACAAAGGAAGAATATGCCTCATTCTACAAGAGTTTGACAAATGACTGGGAAGATCACCTTGCAGTCAAGCATTTCTCTGTCGAGGGACAGCTCGAATTCAAGGCCATTCTTTTTGTCCCAAAAAGAGCTCCATTTGACCTCTTCGACACCCGGAAGAAGATGAACAACATCAAACTATATGTGAGGAGAGTGTTCATCATGGACAACTGTGAAGAGCTCATTCCTGAATATCTCGGCTTTGTCAAGGGTGTTGTTGATTCAGATGATTTGCCACTCAACATTTCTCGTGAGATGCTTCAACAGAATAAGATCTTGAAGGTGATCAGGAAGAACTTGGTGAAGAAATGCATTGAAATGTTCAATGAGATTGCGGAGAACAAGGAGGACTACAACAAATTCTACGAGGCTTTTTCAAAGAACCTGAAATTAGGCATTCACGAAGACAGCCAAAACAGGTCCAAGATAGCAGATCTTCTCCGGTACCACTCTACCAAGAGCGGTGATGACTTGACTAGCCTGAAAGATTACGTTACGAGGATGAAGGAGGGACAGAAAGAGATCTACTACATTACCGGAGAGAGCAAGAAGGCTGTTGAGAATTCTCCATTTTTGGAGCGGCTTAAGAAGAGAGGATACGAAGTACTCTTCATGGTTGATGCCATTGACGAGTATGCCATTGGTCAGTTGAAAGAATACGATGGCAAGAAGCTAGTGTCGGCGACAAAGGAAGGCCTGAAACTTGATGAAACAGAGGAAGAGAAGAAGCAAAGGGAAGAAAAGAAGAAATCATTTGAGAATCTCTGCAAGACAATTAAGGAAATCCTAGGAGATAAAGTAGAGAAAGTTGTGGTCTCCGACAGAATTGTGGACTCCCCCTGCTGCTTAGTGACAGGTGAATATGGTTGGACGGCAAACATGGAGAGGATCATGAAAGCACAAGCTCTGAGAGACAGCAGCATGGGATCCTACATGTCGAGCAAGAAGACGATGGAAATAAACCCCGACAATGGGATTATGGAGGAGCTGAGGAAGAGGGCAGAGGTCGACAAGAACGACAAGTCTGTTAAAGATCTGGTGATGCTGCTTTTCGAGACGGCACTTCTGACATCTGGGTTCAGTCTAGATGATCCAAATACTTTTGCGGGAAGAATTCACAGGATGTTGAAGCTGGGTTTGAGCATCGAAGAAGAAGAGGGCGGCGTGGAAGATGAAGCAATGCCAGCGTTGGAAGAGGAGGGGGGAGAGGAGAGCAAAATGGAAGAGGTGGAT 2109 44.57 MADVKVSDVETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDKSKLDGQPELFIRIVPDKVNKTLTIIDSGVGMTKADLVNNLGTIARSGTKEFMEALQAGADVSMIGQFGVGFYSAYLVAEKVVVTSKHNDDEQYVWESQAGGSFTVTRDVNGEPLGRGTKMTLYLKEDQLEYLEERKIKDLVKKHSEFISYPIELWTEKSTEKEISDDEDDEPKKEEEGDIEEVDEEKETTSKKKKKIKEISHEWQVINKQKPIWLRKPEEITKEEYASFYKSLTNDWEDHLAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKMNNIKLYVRRVFIMDNCEELIPEYLGFVKGVVDSDDLPLNISREMLQQNKILKVIRKNLVKKCIEMFNEIAENKEDYNKFYEAFSKNLKLGIHEDSQNRSKIADLLRYHSTKSGDDLTSLKDYVTRMKEGQKEIYYITGESKKAVENSPFLERLKKRGYEVLFMVDAIDEYAIGQLKEYDGKKLVSATKEGLKLDETEEEKKQREEKKKSFENLCKTIKEILGDKVEKVVVSDRIVDSPCCLVTGEYGWTANMERIMKAQALRDSSMGSYMSSKKTMEINPDNGIMEELRKRAEVDKNDKSVKDLVMLLFETALLTSGFSLDDPNTFAGRIHRMLKLGLSIEEEEGGVEDEAMPALEEEGGEESKMEEVD 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4009881 4012688 - Bma031433 Bma08g00293 87120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00293 703 SUPERFAMILY HSP90 C-terminal domain 546 668 IPR037196 -
Bma08g00293 703 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 9 217 IPR036890 -
Bma08g00293 703 MobiDBLite consensus disorder prediction 675 703 - -
Bma08g00293 703 CDD HATPase_Hsp90-like 19 207 - -
Bma08g00293 703 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 32 186 IPR003594 -
Bma08g00293 703 ProSitePatterns Heat shock hsp90 proteins family signature. 30 39 IPR019805 GO:0005524|GO:0006457|GO:0051082
Bma08g00293 703 Gene3D - 523 673 IPR037196 -
Bma08g00293 703 PIRSF HSP90_HTPG 2 703 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma08g00293 703 MobiDBLite consensus disorder prediction 222 243 - -
Bma08g00293 703 Gene3D - 267 435 - -
Bma08g00293 703 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 1 702 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma08g00293 703 PANTHER HEAT SHOCK PROTEIN 90-1 1 702 - -
Bma08g00293 703 Gene3D - 436 522 - -
Bma08g00293 703 Gene3D - 8 233 IPR036890 -
Bma08g00293 703 MobiDBLite consensus disorder prediction 677 703 - -
Bma08g00293 703 MobiDBLite consensus disorder prediction 218 253 - -
Bma08g00293 703 Pfam Hsp90 protein 189 695 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma08g00293 703 SUPERFAMILY Ribosomal protein S5 domain 2-like 268 523 IPR020568 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 175 192 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 31 53 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 123 145 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 10 30 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 80 97 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 98 115 IPR020575 -
Bma08g00293 703 PRINTS 90kDa heat shock protein signature 193 211 IPR020575 -
Bma08g00293 703 Hamap Chaperone protein HtpG [htpG]. 7 669 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Bma08g00293 703 Coils Coil 527 547 - -
Bma08g00293 703 SMART HKATPase_4 32 187 IPR003594 -
Bma08g00293 703 Coils Coil 232 259 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00293 K04079 HSP90A, htpG; molecular chaperone HtpG - csin:114323954 1175.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00723 Bma-Chr1:6604716 Bma08g00293 Bma-Chr8:4009881 0 dispersed
Bma07g01240 Bma-Chr7:47345593 Bma08g00293 Bma-Chr8:4009881 0 dispersed
Bma08g00293 Bma-Chr8:4009881 Bma12g00860 Bma-Chr12:39399544 0 dispersed
Bma08g00293 Bma-Chr8:4009881 Bma13g00489 Bma-Chr13:9172593 6.88E-12 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g762 Blo06g01136 Blo15g00109 . . . . . . Cmo16g00105 . . . . . . . Cpe14g00083 . . . . . . . . . . . . . . Cone1ag1191 Cone5ag0892 . . Lsi05g01193 . . . . . . Bda15g00711 . Bpe12g00442 Bma08g00293 . . . . Cma16g00098 . Car16g00088 . . . . . . . . . . . . . . . . . . Csa03g01748 Chy06g00977 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000587 3 3 3 2 4 2 5 5 4 3 3 3 4 4 3 4 3 7 3 3 3 4 5 0 4 3 1 4 4 3 102
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00293 Bma_Chr08 FPKM 2.97493 2.54826 3.952852 4.195438 3.570907 3.963232 4.483148 4.48701 4.260301 4.092322