Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00296 GTGGGACTCCTAGTTTTTACTTTGATTTTGTTTCAGATGAAGTCTTACATTTGGCTTCAAACTGCTGATGGTTCGATCCAACAAGTAGAAGAAGAGGTTGCTATGTTTTGCCCATTGATTTGTCGTGAAGTGCTTCAGAAAGGGGTGGGATCTTCCAAAAACTATGCCATATCTCTTCCACAACGAGTTAATCCAGCAATCTTGGGCTTAATTCTTGACTATTGCCGGTTTCATCAAGTACCAGGTCATTCTAATAAGGAGCGTAAAAATTTTGACGAAAAATTCATTCGGATGGACACAAAAAGGTTGTGTGAATTGACATCTGCTGCTGACAGTCTTCAGTTAAAGCCTTTGGTTGATCTAACTAGCCGAGCACTTGCTCGAATAATTGAAGGAAAAACTCCAGAGGAAATCAGAGAAACATTTCATCTACCTGATGATCTAACAGAGGAGGAAAAGTTGGAGCCCCTAAGAAATATTGCTGATGATCCTCGTATACGACTTTTGAATCGATTATATGCTAGAAAGAGGAAGGAGTTAAAGGAACGTGAGAAATTGAAGAATGCTGAGACAGAGGAGGAGCATGTGGATGAGCGCTCAGTGGATGATCTCTTGTCATTTATAAACGGTGAAGACGGAGATTCCAAGGGAACCAAAGCCAATAAAACTAAAAAGAAAAGTCGAAGAAGAAAAGATCATCCAAAGGATTTTTCTTCCAGTAATAATAATGGTACTCATAGTAAGGATTTTGATGCTCTTCCTTCTACCAGCCATTATGGCGAGGTTAGTGAAATTTTAGAGGCATCTTACATTGAAACGTTAAATTTGCAAGATTCTGCGGCTGCGAATTTTTCACCAAGACTTGATTTTGAAGATGGTGGTGACATTGATGATGACTTAGATCCTGCAATGCAAGAAAAACTTGACAGGGAAGTTGAGGATTTTGCGCGAAGACTGAATTCCGATTGGCCGGAAAGAGTGCAGGAATTTTCGTCTCCGGGCCAAGAAAGAAATTTTGTTCCAGTAACAATGAATGGCCATGGTTCCACCCACAGATATTCAAGTATGTCCTTTATA 1077 39.93 VGLLVFTLILFQMKSYIWLQTADGSIQQVEEEVAMFCPLICREVLQKGVGSSKNYAISLPQRVNPAILGLILDYCRFHQVPGHSNKERKNFDEKFIRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRETFHLPDDLTEEEKLEPLRNIADDPRIRLLNRLYARKRKELKEREKLKNAETEEEHVDERSVDDLLSFINGEDGDSKGTKANKTKKKSRRRKDHPKDFSSSNNNGTHSKDFDALPSTSHYGEVSEILEASYIETLNLQDSAAANFSPRLDFEDGGDIDDDLDPAMQEKLDREVEDFARRLNSDWPERVQEFSSPGQERNFVPVTMNGHGSTHRYSSMSFI 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4110209 4113385 + Bma031434 Bma08g00296 87123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00296 359 PANTHER SKP1 12 273 IPR016897 GO:0006511
Bma08g00296 359 MobiDBLite consensus disorder prediction 207 255 - -
Bma08g00296 359 Pfam Skp1 family, tetramerisation domain 17 79 IPR016073 GO:0006511
Bma08g00296 359 SUPERFAMILY POZ domain 15 79 IPR011333 -
Bma08g00296 359 Pfam Skp1 family, dimerisation domain 116 153 IPR016072 GO:0006511
Bma08g00296 359 MobiDBLite consensus disorder prediction 238 252 - -
Bma08g00296 359 Gene3D Potassium Channel Kv1.1; Chain A 10 161 IPR011333 -
Bma08g00296 359 SUPERFAMILY Skp1 dimerisation domain-like 89 158 IPR036296 GO:0006511
Bma08g00296 359 SMART skp1_3 14 115 IPR001232 GO:0006511
Bma08g00296 359 Coils Coil 169 194 - -
Bma08g00296 359 PANTHER OS03G0107000 PROTEIN 12 273 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00296 - - - vvi:100247347 526.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00296 Bma12g01116 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01116 Bma-Chr12:43406432 Bma08g00296 Bma-Chr8:4110209 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g719 Blo06g01134 . . . . Bpe07g00932 . . . . . Cma15g01085 . Car15g00998 . . . . . . . . . . . . . . . . . Cone1ag1171 Cone5ag0879 Cone14ag0074 Cone15ag0077 . . . . . . Bda06g00689 Bda15g00715 . Bpe12g00438 Bma08g00296 Bma12g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003335 2 5 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 7 3 2 49