Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00297 ATGGAAAGTCTTCACGAAATTTCACCAGAACCAGAAATTAACTGCTCAGATTCGGTTCTTGCTCGACAGGTTTGCGATCATGATGAACTCCGGACGGAGCTCGACTCTCTCCGGGATGGCTATCGGAGTCTCGAATCGAAGCTTAGAGAGTTGGAGGATGCGAAGGTTGAGATTCAGAGTGAGAGAGATGATGAGGTGAATCGAAACGCGGAGTTAGTCAAAGGAATCGATGAGATTCGGAGAGAGAGGGAGTTTGTACAAAGTGAATTTTCGAGGCTTCAAGCGGATTTGAGAGATAAAGAGGAAGCGTTCGCGAAAAGATTGGATGAGAAAGAGAAGGAGAAGGAGGAATTGAAGAACGAAGTGGAGGTTTGTAAGGAAAGGGTCGATAAATTGGAAAATGAGAGGCAAGAGAAGAAAGAAGTTTTGAATAAATGTCTGGATTCACTAGTTTCAGCGAAGGATTGCTTGACGAGGGTAATTGAAGGAATCTGCGAAGAAAAAGTCAAAGATGGTGGAGAAGAAAGCGAGGAAATGAAGTTGGGATTGAAAATGGATGACGAATTAAGGCCACTTTCAGCTGGTGTAGCGGAAGTGGACAGGCTTGCGAGGATGGTGGAGGTGAAGATGGAAGAGTACAAAGAGCTCAGAAAGAAAGAGAAAAGAGAGTTGGAGAGTAGTTTGGTGAGTTTGACGGAGGAGAATCGTGATATTAACAGTCTGCTCCGAATTGCTCTGGTGGAGAAGGAGGCTGTAGAAAAGAGTTTAAATAGGTTGAAGGGGAATCCTGAGCAGAAGAGGGTGGCCCTTTTGCAGATTGCTGAGAGGGGGTTGCAGAGAGTTGGGTTTGGATTTATGATGGGTAGTGGTAATTATGAGCAGGCTGTAGACATTGCCGGAGTTAATGCGGGTAGTAAGGTCGAAGAATCTGGTGCTAATTTAGAGACCAAGTCTGATAATAGTGAAAGTGAAGAAGAAGTTATCAGCTTGGCTTCAACTGTGGAGAAAATAATGAAGAATTTACGCTTTGAAATCACTCAACTGAGGAGGTCGTTGGATGAATCTAGGTCAGACACAGAGCGCCTACAAAGTCTATGTGAAAAACAAACTCAAAGAATCGAAGAGAACTTTCTGTACATCAAGGAGTTAGAAGATCGAGAGAGGGTTTTGGTGCAAAATGTTGATGAACTTCTATTGGAAATAAAGGACACAGAAACAGAGGTTGCCAGGTGGAGGGAAGCTTGTGAACTAGAAGTTAAATTAGGAAAAAGTGAGGTTATTGAACGTGACAAGGTGGTTGCCATTTTGAAACAGGAGCTTGAGAAAACAAAGACCGCCTTAGAAATATCAAATGGGAAATTGCAGCTGAAAGAAGAACTTGTAGCTGCAGCCATGGCAGCCCAGGCAGCAGCCGAAAAGTCTCTGCAGGTAGCAGACAGCCGGGCTGCAGTGCTCCGAGAAAGGGCGGAGGAATTAACAAGACAACTAGAAGAAGCCGAGAGCAGAGAGCGGCAGAATCGAAAGGTCAGACGCTTGTGCTGGCCGTGGCGGGGCCCCAAGGTAAATACTTCTGCTAATTCAACAGAAAATGTGAAACGTAAGTTGCCTGAAATGCAGGCCCTGCTCATTTCACGGCCTGATGATTTGTGA 1650 44.97 MESLHEISPEPEINCSDSVLARQVCDHDELRTELDSLRDGYRSLESKLRELEDAKVEIQSERDDEVNRNAELVKGIDEIRREREFVQSEFSRLQADLRDKEEAFAKRLDEKEKEKEELKNEVEVCKERVDKLENERQEKKEVLNKCLDSLVSAKDCLTRVIEGICEEKVKDGGEESEEMKLGLKMDDELRPLSAGVAEVDRLARMVEVKMEEYKELRKKEKRELESSLVSLTEENRDINSLLRIALVEKEAVEKSLNRLKGNPEQKRVALLQIAERGLQRVGFGFMMGSGNYEQAVDIAGVNAGSKVEESGANLETKSDNSESEEEVISLASTVEKIMKNLRFEITQLRRSLDESRSDTERLQSLCEKQTQRIEENFLYIKELEDRERVLVQNVDELLLEIKDTETEVARWREACELEVKLGKSEVIERDKVVAILKQELEKTKTALEISNGKLQLKEELVAAAMAAQAAAEKSLQVADSRAAVLRERAEELTRQLEEAESRERQNRKVRRLCWPWRGPKVNTSANSTENVKRKLPEMQALLISRPDDL 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4118561 4123507 - Bma027318.1 Bma08g00297 87124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00297 549 Coils Coil 437 457 - -
Bma08g00297 549 Coils Coil 27 68 - -
Bma08g00297 549 PANTHER OS08G0559800 PROTEIN 17 542 - -
Bma08g00297 549 PANTHER OS08G0559800 PROTEIN 17 542 IPR040300 -
Bma08g00297 549 Coils Coil 199 241 - -
Bma08g00297 549 Coils Coil 475 509 - -
Bma08g00297 549 Coils Coil 76 149 - -
Bma08g00297 549 Coils Coil 380 414 - -
Bma08g00297 549 Coils Coil 338 358 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00297 - - - pper:18785808 548.895
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00297 Bma-Chr8:4118561 Bma15g00227 Bma-Chr15:2235687 2.76E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g715 Blo06g01132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag0078 Cone15ag0079 . . . . . . . Bda15g00716 . Bpe12g00436 Bma08g00297 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016619 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00297 Bma_Chr08 FPKM 2.45 2.251415 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0