Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00301 TTAATGAGAATGCATTTGTTGCTTCAACTTCCCGTTTTACCCTCTCTTCCATTGTCACTCTCTATCGCTACTCCGCTGTCTCTATTAATCGGACACAGAAGCAGAGGGAGAAGAATATTAAGTTGGGAGATTCGGAGAAGTTCGGTTAGGAGAGGTGGTAGGGTTAGGGCGATGCCTTCTACTGGTGGTGGAAGTGATGATAATGGCGCTCTGTGTAAGTTCAAGCTGAACGAGTCGACGTTTTTGGCTTCTCTTATGCCGACGAAGGAGATTGGTGCCGATCGGTTCATCGAAGCTCACCCGGAATATGATGGCCGCGGTGTCGTGATTGCTATTTTTGATTCTGGCGTAGACCCAGCTGCTGCTGGATTACAAGTCACATCTGACGGAAAGCCAAAAATACTAGATGTTATTGACTGCACTGGAAGTGGAGACATTGATACCTCAAAGGTTGTTAAAGCTGATGCAGATGGCTGCATTATTGGAGCTTCAGGAGCTTCTCTGGTGGTCAATGCTTCATGGAAGAACCCTTCTGGTGAGTGGCATGTGGGTAGTAAACTGGTATATGAATTATTTACGAACACCTTGACCTCTCGTTTGAAGGGAGAGAGAAAAAAGAAGTGGGATGAGAAGAACCAGGAGGAGATTGCCAAAGCTGTGAAGAATCTTGATGAATTTGATCAGAAACATGCCAAAGTGGTGGATGCAAATCTGAAAAGGACTCGTGAAGATCTCCAAAATAGAATTGATGTTTTACGCAAGCAAGCTGATAGCTATGATGACAAAGGCCCAATCATTGATGCTGTTGTGTGGCATGATGGAGAGGTGTGGAGAGTTGCCCTTGACACACAATGTCTCGAGGATGAACCAGATTGTGGAAGACTTGCCAACTTTGTGCCCATAACTAATTATAGGATTGATCGTAAGTTTGGCGTGTTTGGTAAAGTTGATGCCTGCACATTTGTTGTTAATGTGTATGAAGAAGGAAATATCTTAAGCATTGTAACAGATAGTTCTCCTCATGGTACCCATGTCGCTGGTATTGCTTGCGCTTTCCATCCTAAGGAACCTTTGTTAAATGGAGTTGCACCAGGAGCACAGTTAATCTCCTGTAAAATTGGAGACTCACGTTTAGGTTCAATGGAGACTGGAACTGGCTTGACTCGAGCACTGATAGCTGCAGTGGAGCACAAGTGTGATCTTATCAACATGAGTTATGGGGAACCTACATTACTACCAGACTATGGTCGCTTTGTTGACCTCGTCAATGAAGTGGTGAATAAACACAAGTTAATATTTGTGAGTAGTGCTGGCAATAATGGACCTGCTTTGAACACTGTTGGTGCACCTGGTGGTACTAGTTCTTCCATTATCGGAGTTGGTGCATATGTCTCTCCCTCAATGGCTGCTGGTGCACATGGTTTAGTCGAACCTCCCACTGAAGGACTTCAATACACTTGGTCAAGCCGTGGGCCAGCAGCTGATGGAGATATTGGAGTTTCTATAAGTGCTCCTGGTGGGGCTGTTGCTCCTGTACCAACATGGACCCTTCAACGACGTATGCTTATGAATGGAACATCAATGGCATCTCCATCTGCATGTGGGGGAATTGCATTACTTATTAGCGCCATGAAGGCCGAGGGCATTCCAGTGAGCCCTTACACTGTGAGAAAAGCTTTTGAGAATACATCTATTCCTATAGGTTTCAATCCTGAAGACAAATTATCCACTGGGCATGGTCTTATGCAAGTTGACAAGGCTCACGAATATATTAAGCAGTCCAAGAATCTTCCTGGTGTTTACTATCAAATGAAGATCAACAGAAGCGGGAAATCAACTCCCACATGGCGTGGCATCTACCTTAGAGAGGCTTGTGCTTGTCAACAGACTTCAGAGTGGACTGTACAAATTGAACCTAAATTCCATAAATGTGCAAACTATTTAGAAGAGTTGGTTCCTTTTGAGGAGTGCATTGAGTTGCGTTCATCTGAAAGCACTGTTGTGAGAGCACCTGATTATCTCCTGCTCACTCATAATGGTCGCAGCTTTAATATTGTTGTTGACCCTACAAATCTCAGTGATGGTCTGCACTACTATGAAGTCTGTGGCTACGATTGCAAAGCTCCATGGCGTGGTCCTCTGTTCAGTATCCCGGTCACCATAACAAAGCCTACAACTGTTGTGAATCGACCTCCGGTTATTTCATTTTCAAGAATGTCCTTCTCACCAGGCCACATAGAAAGGAGATTCATAGAGGTGCCACGTGGTGCTAATTGGGTTGAAGCAACAATGCAAACATCTGGATTTGACACAGCACGGAGGTTTTTTATTGATACTGTTCAGGTTTCACCTTTAAAAAGGCCTATCAATTGGAAGAGTGTTGCAATGTTTTCTTCTCCTGCGGCGAAAGGCTTTTATATTCCTGTTGAGGATGGTCAGACATTGGAATTGACAATAGCTCAGTTTTGGTCAAGCGGCATAGGAAGTCATGAAACAGCAAATGTTGATTTTGAGATTAAATTTCACGGGATCAACGTCAATAAGAAGGAAATAATTCTTGATGGAAGTGATGGACCTATCAGAATTGATGCTGAAGCTTTATTGACATCAGAGAAACTTGTCCCTGTTGCTATTCTCAACAAGTTAAGAGTTCCATATTGTCCAATTGAATCTAAACTAAGTACTCTCGCAACCACTCGTGACAAGCTCCCATCAGGAAAGCAGATACTGGCATTGACATTGACGTACAAAATTAAATTGGAGGAGGGTGCTGAAATCAGGCCTCATATTCCATTACTTAACAACAGGATATATGACAATAAATTTGAGTCTCAGTTTTATATGATTTCTGACATGTACAAGCGTGTATATTCTCTTGGCGATGTGTATCCAAAATTTTCTAAACATCCCAAAGGAGAATACACTTTACAGTTGCATATCAGGCATGAGAATTTGCATTGTTTGGAAAAAATGAAGCAGTTGATATTATTTATTGAAAAAAAGTTGGAGGAGAAGGATGCAATTAGATTGAGTTTTTTCTCTCAACCCGATGATCATGTGATGGGAAATGGTTCGTTTAAATCTTCGGTTTTAGTTCCAGGGGATAAAGAAGCATTCTATCTTGGCCCACCATCCAAAGACAAGCTTCCAAAGAATTCTCCGCAAGGATCTATTTTGGTGGGGAAAATCTCTTTCGGGAAGCTAAAGTCTCATGGGGGTGAAGAGGGAAAAAATCCTGAAAATCATCCTGTCTCTTATCAAATTTCATATATTGTTCCACCAAATAAGGTTGATGATGATAAAACGAAAAATAATTCGTCAGCTTCTACCAAGGCAGTTTCTGAACGCTTAGAAGAGGAGGTCCGAGATGCAAAAATAAAAGTTCTTGCAAGCCTAAAGCAGGAAACCGATGAAGAGCGCTCAGAATGGAAAAGCTTATCCATTGCTCTCAAGTCTGAGTACTCTAGTTACACTCCATTGCTTGCAAAAATCTTGGAAGGTTTAACTTCTCTAAGTAATGTTGAGAGCAAAGTCCTTCATTATGAGGAGGTCATTGAAGCAGCAAACGAAGTCATAGATAGTATAAACAAAGAGGAATTGGTAAAATGTTTTGCCATGAAATCTGACCCAGAAGACGAGGAGGCAGAAAAAACGAGGAAAAAGATGGAGATGACTCGTGATCACCTGGCCGAGGCACTCTACCAAAAAGGTCTTGCTTTGACGATGATTGAATCGTTAAGGGCTGAAGAAGATTCTAAAGATGAGGGGAAAAGTGATGATCAATCTGCACCGGAGTCTGGGATGGAGGAAGATCTCTTTGAAGAAAACTTTAAAGAACTAAAAAAATGGGTGGACGTCAAATCCTCCAAGTACGGAACACTCACTGTCCTTCACGAAAAACGAAGAGGACGGCTTGGAACAGCTCTCAAGGTGTTGAACGACATTATTCAAGGTGATGGTGACCCAGCAAAGAGAAGGTTCTATGAACTGAAGCTCAAATTGCTTGACGATATTGGATGGAGTCATTTGGCGACGTATGAGAGACAATGGATGCACGTACGATTTCCTCCGAGCTTGCCTTTATTTTAA 4089 42.41 LMRMHLLLQLPVLPSLPLSLSIATPLSLLIGHRSRGRRILSWEIRRSSVRRGGRVRAMPSTGGGSDDNGALCKFKLNESTFLASLMPTKEIGADRFIEAHPEYDGRGVVIAIFDSGVDPAAAGLQVTSDGKPKILDVIDCTGSGDIDTSKVVKADADGCIIGASGASLVVNASWKNPSGEWHVGSKLVYELFTNTLTSRLKGERKKKWDEKNQEEIAKAVKNLDEFDQKHAKVVDANLKRTREDLQNRIDVLRKQADSYDDKGPIIDAVVWHDGEVWRVALDTQCLEDEPDCGRLANFVPITNYRIDRKFGVFGKVDACTFVVNVYEEGNILSIVTDSSPHGTHVAGIACAFHPKEPLLNGVAPGAQLISCKIGDSRLGSMETGTGLTRALIAAVEHKCDLINMSYGEPTLLPDYGRFVDLVNEVVNKHKLIFVSSAGNNGPALNTVGAPGGTSSSIIGVGAYVSPSMAAGAHGLVEPPTEGLQYTWSSRGPAADGDIGVSISAPGGAVAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAEGIPVSPYTVRKAFENTSIPIGFNPEDKLSTGHGLMQVDKAHEYIKQSKNLPGVYYQMKINRSGKSTPTWRGIYLREACACQQTSEWTVQIEPKFHKCANYLEELVPFEECIELRSSESTVVRAPDYLLLTHNGRSFNIVVDPTNLSDGLHYYEVCGYDCKAPWRGPLFSIPVTITKPTTVVNRPPVISFSRMSFSPGHIERRFIEVPRGANWVEATMQTSGFDTARRFFIDTVQVSPLKRPINWKSVAMFSSPAAKGFYIPVEDGQTLELTIAQFWSSGIGSHETANVDFEIKFHGINVNKKEIILDGSDGPIRIDAEALLTSEKLVPVAILNKLRVPYCPIESKLSTLATTRDKLPSGKQILALTLTYKIKLEEGAEIRPHIPLLNNRIYDNKFESQFYMISDMYKRVYSLGDVYPKFSKHPKGEYTLQLHIRHENLHCLEKMKQLILFIEKKLEEKDAIRLSFFSQPDDHVMGNGSFKSSVLVPGDKEAFYLGPPSKDKLPKNSPQGSILVGKISFGKLKSHGGEEGKNPENHPVSYQISYIVPPNKVDDDKTKNNSSASTKAVSERLEEEVRDAKIKVLASLKQETDEERSEWKSLSIALKSEYSSYTPLLAKILEGLTSLSNVESKVLHYEEVIEAANEVIDSINKEELVKCFAMKSDPEDEEAEKTRKKMEMTRDHLAEALYQKGLALTMIESLRAEEDSKDEGKSDDQSAPESGMEEDLFEENFKELKKWVDVKSSKYGTLTVLHEKRRGRLGTALKVLNDIIQGDGDPAKRRFYELKLKLLDDIGWSHLATYERQWMHVRFPPSLPLF 1362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 4169657 4189003 + Bma027324.1 Bma08g00301 87128

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00301 1362 ProSiteProfiles Serine proteases, subtilase domain profile. 90 588 - -
Bma08g00301 1362 MobiDBLite consensus disorder prediction 1248 1270 - -
Bma08g00301 1362 Pfam Subtilase family 105 564 IPR000209 GO:0006508|GO:0008236
Bma08g00301 1362 Gene3D - 1111 1362 - -
Bma08g00301 1362 ProSitePatterns Serine proteases, subtilase family, histidine active site. 341 351 IPR022398 -
Bma08g00301 1362 ProSitePatterns Serine proteases, subtilase family, serine active site. 525 535 IPR023828 -
Bma08g00301 1362 SUPERFAMILY Subtilisin-like 88 604 IPR036852 GO:0004252|GO:0006508
Bma08g00301 1362 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 85 567 IPR034051 GO:0006508|GO:0008240
Bma08g00301 1362 Pfam Tripeptidyl peptidase II 868 1052 IPR022229 -
Bma08g00301 1362 PANTHER PEPTIDASE S8 64 1261 - -
Bma08g00301 1362 PRINTS Subtilisin serine protease family (S8) signature 105 124 IPR015500 -
Bma08g00301 1362 PRINTS Subtilisin serine protease family (S8) signature 524 540 IPR015500 -
Bma08g00301 1362 PRINTS Subtilisin serine protease family (S8) signature 337 350 IPR015500 -
Bma08g00301 1362 PANTHER TRIPEPTIDYL PEPTIDASE II 64 1261 - -
Bma08g00301 1362 Coils Coil 235 262 - -
Bma08g00301 1362 MobiDBLite consensus disorder prediction 1248 1264 - -
Bma08g00301 1362 Gene3D - 149 214 - -
Bma08g00301 1362 MobiDBLite consensus disorder prediction 1095 1115 - -
Bma08g00301 1362 Gene3D Peptidase S8/S53 domain 234 598 IPR036852 GO:0004252|GO:0006508
Bma08g00301 1362 Gene3D - 602 733 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00301 K01280 TPP2; tripeptidyl-peptidase II [EC:3.4.14.10] - qsu:112026441 2113.58
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00301 Bma-Chr8:4169657 Bma08g00323 Bma-Chr8:4938563 2.60E-177 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g697 Blo06g01128 . . . . . . . . . . Cma15g01096 . Car15g01007 . . . . . . . . . . Cla01g00436 . . Cco01g0470 . . Cre09g2075 . Cone5ag0871 . . . . . . . . . Bda15g00725 . . Bma08g00301 . . . Cmo15g01154 . . . . . Cpe13g00255 Bhi12g00508 . . . . . Lcy12g0027 . . . . . . . . . . Cme09g01554
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005749 1 1 2 3 0 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00301 Bma_Chr08 FPKM 8.854742 10.212288 11.539028 11.136977 23.616152 19.003813 21.908241 10.497184 9.876728 11.538299