Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00340 ATGGGTAATTCATTTGGGTGTTCTGCTTCGGGGGAGAGACTTGTATCGGCTGCAAGAGATGGGGATTTGGTGGAGGCCAAAATGTTGTTGGATTTCAACCCTTGCCTGGCCAAGTACTCCACTTTCGGCGGCCTCAATACTCCTCTCCATTTTGCTGCCGCCAAGGGCCACAATGAGATTGTCGCCCTGTTGCTAGAAAATGGAGCCGATGTTAATTCCAGAAATTATTGCGGCCAGACAGCTTTGATGCAAGCTTGTCGATACGGACACTGGGAAGTTATACAAACTCTTCTTCTTTTTAGGTGTAATGCTACTAGAGCAGACTACCTGAGTGGCCGGACTGCTCTTCATTTTGCTGCGTTAAATGGTCATGTAAGATGCATGAGACTTGTTGTAGCTGATTTCATTCCGAGTGCTCCTTATGAAGCGATAAATGCCAAGATAAACGGCAACAGAGCTGATGACTCAAATTGCAGTGTGTTGTCGAAATTTGTAAATAAGGCAGCCGATGGAGGTATCACCGCTCTTCACATGGCGGCCTTAAACGGGTACTTTGATTGTGTTCAACTCTTGCTCGATCTTCAGGCCAACGTTTCGGCCGTGACATTTCATTATGGAACATCAATGGATTTGATTGGAGCCGGAAGCACTCCTTTGCATTATGCTGCTTGTGGGGGTAATTTGAAGTGTTGTCAGGCAAGAACGCACTTTTATAGATGGCTTCCTTTAGACATAGCTAGAATGTGGAGCCGCCATTGGCTCGAACCATTTCTACTACCCAATTCCGCTTCCTCCTTACCTCCATTTCCCGTGTCAAGTTACCTTTCGTTGCCTCTCTTGAGCATTCTTAACATCGCAAGAGATTTTGGATTCAAGTCTGTGACTGCAACAAACGATGATGTGGATGCGTGTGCCGTGTGTTTAGAGAGAGTATGCTCTGTAGCAGCCGAAGGATGTGGTCACGAACTATGCGTAAGATGCGCATTATATCTTTGTTCGACGAGTAATCTCTCATCGGAAATAGTTAATCCACTCGGGTCTATTCCGTGTCCTCTATGTCGGCAAGGAATAATCTCGTTTGTCAAATTACCATCTTCTCCGGCAAAGGAGAAACAATCGCACCTTTCATTGGCACTCTGTACCCCATGCATGCTTCATAGCCGGGACCCGGAATCTCCTGATCGTACGATCCCAATCAAGAAGAACAATCACGAGCCATCCAATTCTTCGGAATTATTTTGCCCTCTTACTTGTACCCCATTTCCTTCAGTTACCATTCCGTTATGCACATGCCAAGACGTTCCTTGTTCGTCTTTCGAGCCGCGTGAAATTGAATCACAAAACACATCGACGGCTGAGGATAAATTGGACGGTTCTAGACTCGAAAGAACGAGCTGTTCGAGTATGTTTTGGGGGAGGAGAAGCTGCAGCCGAGAGAATCAGTGCAATTCGGAAATCAACGCATGA 1467 46.28 MGNSFGCSASGERLVSAARDGDLVEAKMLLDFNPCLAKYSTFGGLNTPLHFAAAKGHNEIVALLLENGADVNSRNYCGQTALMQACRYGHWEVIQTLLLFRCNATRADYLSGRTALHFAALNGHVRCMRLVVADFIPSAPYEAINAKINGNRADDSNCSVLSKFVNKAADGGITALHMAALNGYFDCVQLLLDLQANVSAVTFHYGTSMDLIGAGSTPLHYAACGGNLKCCQARTHFYRWLPLDIARMWSRHWLEPFLLPNSASSLPPFPVSSYLSLPLLSILNIARDFGFKSVTATNDDVDACAVCLERVCSVAAEGCGHELCVRCALYLCSTSNLSSEIVNPLGSIPCPLCRQGIISFVKLPSSPAKEKQSHLSLALCTPCMLHSRDPESPDRTIPIKKNNHEPSNSSELFCPLTCTPFPSVTIPLCTCQDVPCSSFEPREIESQNTSTAEDKLDGSRLERTSCSSMFWGRRSCSRENQCNSEINA 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6103613 6106546 - Bma027383.1 Bma08g00340 87167

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00340 488 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Bma08g00340 488 ProSiteProfiles Ankyrin repeat region circular profile. 171 200 - -
Bma08g00340 488 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Bma08g00340 488 Pfam Ankyrin repeats (3 copies) 112 199 IPR002110 GO:0005515
Bma08g00340 488 Gene3D - 143 233 IPR036770 -
Bma08g00340 488 ProSiteProfiles Ankyrin repeat profile. 171 203 IPR002110 GO:0005515
Bma08g00340 488 SUPERFAMILY Ankyrin repeat 15 262 IPR036770 -
Bma08g00340 488 PANTHER HOMEOBOX PROTEIN WARIAI 1 488 - -
Bma08g00340 488 ProSitePatterns Zinc finger RING-type signature. 319 328 IPR017907 -
Bma08g00340 488 SMART ANK_2a 111 141 IPR002110 GO:0005515
Bma08g00340 488 SMART ANK_2a 44 73 IPR002110 GO:0005515
Bma08g00340 488 SMART ANK_2a 171 200 IPR002110 GO:0005515
Bma08g00340 488 SMART ANK_2a 77 106 IPR002110 GO:0005515
Bma08g00340 488 SMART ANK_2a 214 243 IPR002110 GO:0005515
Bma08g00340 488 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 362 IPR013083 -
Bma08g00340 488 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Bma08g00340 488 ProSiteProfiles Zinc finger RING-type profile. 304 354 IPR001841 -
Bma08g00340 488 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Bma08g00340 488 SUPERFAMILY RING/U-box 300 360 - -
Bma08g00340 488 Gene3D - 8 142 IPR036770 -
Bma08g00340 488 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 488 - -
Bma08g00340 488 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00340 K19044 XBAT32_33; E3 ubiquitin-protein ligase XBAT32/33 [EC:2.3.2.27] - qsu:111997725 783.482
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma07g00104 Bma-Chr7:1775204 Bma08g00340 Bma-Chr8:6103613 4.91E-31 dispersed
Bma08g00340 Bma-Chr8:6103613 Bma11g00661 Bma-Chr11:12527009 7.66E-135 dispersed
Bma08g00340 Bma-Chr8:6103613 Bma11g00121 Bma-Chr11:1149258 6.71E-31 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g617 Blo06g01115 . . . . . . . . . Cma02g01040 . Car02g00785 . . Cpe05g00681 . . . . . . . . Cla01g00540 Cam01g0564 Cec01g0554 Cco01g0579 Clacu01g0560 Cmu01g0532 Cre09g1977 . . . . . Csa05g00574 Chy09g00931 . . . . Bda15g00735 . Bpe12g00419 Bma08g00340 . . Cmo02g01055 . . . . . . Cpe13g00045 . . . . . . . . . . . . . . Lsi09g00584 . . Cme09g01458
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006256 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00340 Bma_Chr08 FPKM 2.321755 2.123474 1.994687 2.041492 4.986798 5.476705 4.598462 1.496107 1.776044 1.614007