Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00341 ATGGGAGCTGTTTTTGCCAAAGACCTGATTGAACATGGATCTTCGTCTTCTTCTCCGTTGAAATCCCAGTTCGGGGACTTACCAGAGAGCTGTATTTCGGAGATTTTCATGTACTTAGACCCACCCGATGTCTGTAAATTGGCCCGATTGAACCGCGCTTCCCGCGATGCCTCTTTTGCTGATTTTGTTTGGGAATCAAAGCTGCCTTTGAATTATAAGTTTCTTGTGAAGAAATTTTGCTATCAGGATGCTGATTACATGTGCAAGAAAGATGTTTATGCCCGATTATGTCGACCTCATCGATTCGACAAAGGCAAAAAAGAATTCTGGTTAGACAAGGGTTCTGGTAAAATCTTCTTGGCGATTTCGTCCAAAGCTTTGAAGATAACTGGAATTGATGATAGAAGATATTGGATTCATATGCCATCCGAAGAATCCAGGTTTTATTCGGTGGCATATCTCAAACAAATCTGGTGGGTAGAAATCTTGGGAGAATTAGAGTTCGAGTTTCCACCCGGAAGCTACAGCGTATATTTCCGGCTCCAGCTCGGGAAAACCTCGAGAAGATTTGGCAGAAGAATTGCAGAGCTTGATCAGGTCCATGGTTGGGATATAAAACCAGTTAGATTTCAACTCTCAGCCTCTAACGGCCAAAATGCCATATCGGAATGTTATTTGGATCAATTTGGCAACTGGGTCGATTACCACGTCGGCGATTTTACAGTCGATAATCCATACTCGCTCATGAAGATCAAGTTTTCGATGATGCAAATTGATTGTACGCATACAAAAGGCGGTTTGTGCGTAGATTCGGTGTTTATAAGACCAAAATTTGGGGGTAAGGGTTGA 849 42.52 MGAVFAKDLIEHGSSSSSPLKSQFGDLPESCISEIFMYLDPPDVCKLARLNRASRDASFADFVWESKLPLNYKFLVKKFCYQDADYMCKKDVYARLCRPHRFDKGKKEFWLDKGSGKIFLAISSKALKITGIDDRRYWIHMPSEESRFYSVAYLKQIWWVEILGELEFEFPPGSYSVYFRLQLGKTSRRFGRRIAELDQVHGWDIKPVRFQLSASNGQNAISECYLDQFGNWVDYHVGDFTVDNPYSLMKIKFSMMQIDCTHTKGGLCVDSVFIRPKFGGKG 282
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6178067 6180234 + Bma027385.1 Bma08g00341 87168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00341 282 ProSiteProfiles F-box domain profile. 21 67 IPR001810 GO:0005515
Bma08g00341 282 PANTHER F-BOX PROTEIN PP2-A14 1 277 - -
Bma08g00341 282 Pfam Phloem protein 2 120 276 IPR025886 -
Bma08g00341 282 PANTHER F-BOX PROTEIN PP2-A15 1 277 - -
Bma08g00341 282 SUPERFAMILY F-box domain 23 98 IPR036047 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00341 - - - qsu:112033932 404.445
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00341 Bma-Chr8:6178067 Bma10g00068 Bma-Chr10:653529 1.23E-61 dispersed
Bma04g01077 Bma-Chr4:23207290 Bma08g00341 Bma-Chr8:6178067 6.55E-111 transposed
Bma12g00101 Bma-Chr12:1672463 Bma08g00341 Bma-Chr8:6178067 3.28E-115 transposed
Bma12g01136 Bma-Chr12:43722091 Bma08g00341 Bma-Chr8:6178067 2.42E-161 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g604 Blo06g01114 . . . . Bpe07g00950 . . . . . . . . . . . . . . . . . . Cla01g00547 Cam01g0572 Cec01g0562 Cco01g0588 Clacu01g0566 Cmu01g0538 Cre09g1969 . . . . . Csa05g00583 Chy09g00923 . . . Bda06g00670 Bda15g00737 . Bpe12g00417 Bma08g00341 . . . . . . . . . . . . . . . . . . . . . . . . Lsi09g00591 . . Cme09g01452
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001664 6 3 1 3 3 2 3 2 2 2 2 2 2 2 2 3 2 3 3 2 2 2 2 2 2 2 1 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00341 Bma_Chr08 FPKM 2.161754 2.332128 1.724854 1.522847 4.198558 3.78694 4.040996 3.301614 2.978457 3.375932