Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00344 ATGGCTGATCCTCACCCTAAAACCCCTCTCACTGATCCACTACACAACCCACCTCCTCCCCCTCCACCTCCACCGCCGCCGCTGCCGCCGTCGCCTTCTCCTGCCCCTGTTGCTTTGCAAGTAAGAGTTCCAGGGGACACTGATCTTATAATTCCTCCGGTTCCTGTTCCTTCTCCTGCTTCAGTTTCTTCTCAACTGATCTCGCCGGCGACCGGCAGGCATACGGCTTACAGGGGAATTAGAAGCCGAAGTGGGAAATGGGTTTCTGAAATCCGGGAGCCACGTAAAACCAGCCGCATTTGGCTTGGAACTTACTTGACGCAGAAAATGGCGGCGGCAGCATATGATGTTGCCGCCATTGCTCTGAAAGGCCCGGACACGCCCTTGAATTTTCCGAACTTGATTCTATCATATCCGATTCCAGCTTCTGCTTCTCCTGCCGACATTCGCGCTGCAGCAGCTATTGCTGCAGCGGCTCAGCAGCCAAGGCTGCCGGAGAGCGGCGGTGAAAGCTCCCAACTTAGCCGGCCAGTGTCAGAAGAGCTTCCGAGTGCGGTGGAGGGGAAAACATCAGAGTTTATTGACGAGGAAGAGTTACTGAATATGCCTAATGTGCTTGTAGACATGGCCAAAGGTATGCTGGTAAGCCCTCCTCGGCTGAAGTCGTCATCCTCCGACGACTCGCAGGACGATTCGGCCGGAGGTGGACTATGGAATTACAGTTGA 726 54.82 MADPHPKTPLTDPLHNPPPPPPPPPPPLPPSPSPAPVALQVRVPGDTDLIIPPVPVPSPASVSSQLISPATGRHTAYRGIRSRSGKWVSEIREPRKTSRIWLGTYLTQKMAAAAYDVAAIALKGPDTPLNFPNLILSYPIPASASPADIRAAAAIAAAAQQPRLPESGGESSQLSRPVSEELPSAVEGKTSEFIDEEELLNMPNVLVDMAKGMLVSPPRLKSSSSDDSQDDSAGGGLWNYS 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6213901 6214626 + Bma027389.1 Bma08g00344 87171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00344 241 SMART rav1_2 76 138 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 MobiDBLite consensus disorder prediction 165 179 - -
Bma08g00344 241 Pfam AP2 domain 76 124 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 MobiDBLite consensus disorder prediction 162 194 - -
Bma08g00344 241 MobiDBLite consensus disorder prediction 10 37 - -
Bma08g00344 241 MobiDBLite consensus disorder prediction 216 241 - -
Bma08g00344 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 62 240 - -
Bma08g00344 241 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 62 240 - -
Bma08g00344 241 ProSiteProfiles AP2/ERF domain profile. 76 132 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 MobiDBLite consensus disorder prediction 218 241 - -
Bma08g00344 241 SUPERFAMILY DNA-binding domain 76 133 IPR016177 GO:0003677
Bma08g00344 241 Gene3D AP2/ERF domain 76 133 IPR036955 GO:0003700|GO:0006355
Bma08g00344 241 PRINTS Ethylene responsive element binding protein signature 77 88 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 PRINTS Ethylene responsive element binding protein signature 114 134 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 CDD AP2 77 134 IPR001471 GO:0003700|GO:0006355
Bma08g00344 241 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00344 Bma-Chr8:6213901 Bma14g02068 Bma-Chr14:44050117 2.77E-50 dispersed
Bma08g00344 Bma-Chr8:6213901 Bma08g00345 Bma-Chr8:6219460 3.61E-35 tandem
Bma10g01191 Bma-Chr10:42138525 Bma08g00344 Bma-Chr8:6213901 1.38E-18 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57731 PF00847 AP2 1.80E-08 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00344 - - cit:102618475 185.267