Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00345 TTAATGGAGGTTTTCTCAACTTTGTTTGATTCTAATTATGCTTCTTCGGCAGGAAGTGATATTAGCCGGAGGGGGAATTTTTCCGACGAGGAGCTTATTCTGGCGGCGAGCTCTCCGAAGAAGAGAGCCGGAAGGAAGAAGTTTAAGGAGACGAGGCACCCAGTTTTCCGGGGAGTGAGGATGAGGAACTCCGGCAAGTGGGTTTGTGAAGTCAGAGAGCCGACTAAGCAGGCTAGGATTTGGCTCGGGACGTTTCCGACAGCGGAAATGGCGGCCAGAGCCCATGACGTGGCAGCAATTGCTCTCCGCGGCCGGGCTGCTTGCTTGAACTTTGCAGACTCTGCATGGCGGCTTCCTGTGCCGTCATCGGCGGAGGCAAAGGATATTCAGAAGGCAGCGGCGGAAGCTGCAGAGGCATTCCGGCCACGCCCCGAAAATGAGGAGTTGAAGCCCGAAAAATTCACGGCAGAAACGCCGGAAAATGTGTTCTACATGGACGAGGAGGCTGTTTTCGGGATGCCAAGGCTGCTGGCAAACATGGCGGAGGGAATGCTATTGCCGCCGCCACAGGGAGAGGACAGCAGAGCTGATGACGGCGATTTCCTTGCCGACGTGTCATTATGGAGTTACTCTATATAA 639 54.46 LMEVFSTLFDSNYASSAGSDISRRGNFSDEELILAASSPKKRAGRKKFKETRHPVFRGVRMRNSGKWVCEVREPTKQARIWLGTFPTAEMAARAHDVAAIALRGRAACLNFADSAWRLPVPSSAEAKDIQKAAAEAAEAFRPRPENEELKPEKFTAETPENVFYMDEEAVFGMPRLLANMAEGMLLPPPQGEDSRADDGDFLADVSLWSYSI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6219460 6220098 + Bma027390.1 Bma08g00345 87172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00345 212 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 212 IPR045277 GO:0003700
Bma08g00345 212 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 CDD AP2 56 114 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 SUPERFAMILY DNA-binding domain 55 114 IPR016177 GO:0003677
Bma08g00345 212 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 SMART rav1_2 55 118 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 Pfam AP2 domain 54 104 IPR001471 GO:0003700|GO:0006355
Bma08g00345 212 Gene3D AP2/ERF domain 55 113 IPR036955 GO:0003700|GO:0006355
Bma08g00345 212 PANTHER AP2/ERF DOMAIN-CONTAINING TRANSCRIPTION FACTOR 16 212 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00345 Bma14g02069 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00345 Bma-Chr8:6219460 Bma12g01131 Bma-Chr12:43700609 2.78E-105 dispersed
Bma14g02068 Bma-Chr14:44050117 Bma08g00345 Bma-Chr8:6219460 5.04E-36 dispersed
Bma08g00344 Bma-Chr8:6213901 Bma08g00345 Bma-Chr8:6219460 3.61E-35 tandem
Bma14g00582 Bma-Chr14:6297605 Bma08g00345 Bma-Chr8:6219460 3.47E-16 transposed
Bma10g01190 Bma-Chr10:42087308 Bma08g00345 Bma-Chr8:6219460 1.46E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57732 PF00847 AP2 1.50E-13 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00345 - K09286 csv:101220749 262.307