Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00348 | ATGGTGAGAGGAAAAATCCAGATGAAAAAAATAGAAAATTCTGCAAGTAGGCAAGTAACGTTTTCCAAAAGAAGAAATGGGCTGCTGAAGAAAGCTTACGAGCTCTCTGTGCTGTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGCAGACTCTTTGAATTTTCAAGCTCTGACATTCAAAAGACGATAGAACGTTATCAGAAGCATGTAGACGAACGACGTGGTGGGAAGGTCGACATGCATCTCTATATCGAGCAACTGAAGCATGAAGTTGCAGGCATTGCTAAACAGATTGAGCAACTAGAAGAATCAAAAAGAAAACTAATGGGACATGGATTGGGAAGTTGTTCAAATGAAGAGCTGCAGGAGATTGAGAAGCAGTTGGAGAAGAGCTTATCTTGCATTAGGCAAAGAAAGGATCAGCTGTTCAAGGAACAAATCGAGCAACTAAAAGCAAAGGAGAGACTTCTTTTAGAAGAAAATGCAGAGTTATCTATGCAGTGTGGTGGAAAAGTAATGGTGGGAGCAGCTGCAAGTGTAGACACGGTGGAGGATGCATCCTACAACAAATGTAGCCAAAGTTCACAAGCACACACCCAATTGTTCATTGGATTTCGTTACTTATAA | 636 | 40.88 | MVRGKIQMKKIENSASRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLFEFSSSDIQKTIERYQKHVDERRGGKVDMHLYIEQLKHEVAGIAKQIEQLEESKRKLMGHGLGSCSNEELQEIEKQLEKSLSCIRQRKDQLFKEQIEQLKAKERLLLEENAELSMQCGGKVMVGAAASVDTVEDASYNKCSQSSQAHTQLFIGFRYL | 211 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 6414917 | 6417872 | + | Bma027396.1 | Bma08g00348 | 87175 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00348 | 211 | Coils | Coil | 150 | 170 | - | - | |
Bma08g00348 | 211 | PANTHER | MADS BOX PROTEIN | 1 | 208 | - | - | |
Bma08g00348 | 211 | Pfam | K-box region | 88 | 171 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma08g00348 | 211 | Coils | Coil | 87 | 107 | - | - | |
Bma08g00348 | 211 | SUPERFAMILY | SRF-like | 3 | 77 | IPR036879 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | ProSiteProfiles | K-box domain profile. | 87 | 177 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Bma08g00348 | 211 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | Gene3D | - | 14 | 94 | IPR036879 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 208 | - | - | |
Bma08g00348 | 211 | CDD | MADS_MEF2_like | 3 | 72 | IPR033896 | GO:0000977|GO:0045944 | |
Bma08g00348 | 211 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Bma08g00348 | 211 | Coils | Coil | 121 | 141 | - | - | |
Bma08g00348 | 211 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00348 | Bma10g01180 | CCT | |
Bma08g00348 | Bma10g01180 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00348 | Bma-Chr8:6414917 | Bma05g01120 | Bma-Chr5:49986424 | 1.46E-48 | dispersed | |
Bma12g01129 | Bma-Chr12:43675318 | Bma08g00348 | Bma-Chr8:6414917 | 1.53E-34 | dispersed | |
Bma08g00348 | Bma-Chr8:6414917 | Bma08g00349 | Bma-Chr8:6699243 | 9.52E-152 | tandem | |
Bma02g00105 | Bma-Chr2:951013 | Bma08g00348 | Bma-Chr8:6414917 | 1.09E-43 | transposed | |
Bma02g01147 | Bma-Chr2:53390478 | Bma08g00348 | Bma-Chr8:6414917 | 1.00E-55 | transposed | |
Bma14g01110 | Bma-Chr14:13960088 | Bma08g00348 | Bma-Chr8:6414917 | 2.59E-11 | transposed | |
Bma10g01180 | Bma-Chr10:41770526 | Bma08g00348 | Bma-Chr8:6414917 | 1.00E-62 | wgd | |
Bma12g01138 | Bma-Chr12:43816108 | Bma08g00348 | Bma-Chr8:6414917 | 4.59E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57733 | PF01486 | K-box | 6.80E-25 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00348 | - | - | cit:102577938 | 239.965 |