Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00348 ATGGTGAGAGGAAAAATCCAGATGAAAAAAATAGAAAATTCTGCAAGTAGGCAAGTAACGTTTTCCAAAAGAAGAAATGGGCTGCTGAAGAAAGCTTACGAGCTCTCTGTGCTGTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGCAGACTCTTTGAATTTTCAAGCTCTGACATTCAAAAGACGATAGAACGTTATCAGAAGCATGTAGACGAACGACGTGGTGGGAAGGTCGACATGCATCTCTATATCGAGCAACTGAAGCATGAAGTTGCAGGCATTGCTAAACAGATTGAGCAACTAGAAGAATCAAAAAGAAAACTAATGGGACATGGATTGGGAAGTTGTTCAAATGAAGAGCTGCAGGAGATTGAGAAGCAGTTGGAGAAGAGCTTATCTTGCATTAGGCAAAGAAAGGATCAGCTGTTCAAGGAACAAATCGAGCAACTAAAAGCAAAGGAGAGACTTCTTTTAGAAGAAAATGCAGAGTTATCTATGCAGTGTGGTGGAAAAGTAATGGTGGGAGCAGCTGCAAGTGTAGACACGGTGGAGGATGCATCCTACAACAAATGTAGCCAAAGTTCACAAGCACACACCCAATTGTTCATTGGATTTCGTTACTTATAA 636 40.88 MVRGKIQMKKIENSASRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLFEFSSSDIQKTIERYQKHVDERRGGKVDMHLYIEQLKHEVAGIAKQIEQLEESKRKLMGHGLGSCSNEELQEIEKQLEKSLSCIRQRKDQLFKEQIEQLKAKERLLLEENAELSMQCGGKVMVGAAASVDTVEDASYNKCSQSSQAHTQLFIGFRYL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6414917 6417872 + Bma027396.1 Bma08g00348 87175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00348 211 Coils Coil 150 170 - -
Bma08g00348 211 PANTHER MADS BOX PROTEIN 1 208 - -
Bma08g00348 211 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma08g00348 211 Coils Coil 87 107 - -
Bma08g00348 211 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Bma08g00348 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma08g00348 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Bma08g00348 211 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Bma08g00348 211 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Bma08g00348 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma08g00348 211 Coils Coil 121 141 - -
Bma08g00348 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00348 Bma10g01180 CCT
Bma08g00348 Bma10g01180 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00348 Bma-Chr8:6414917 Bma05g01120 Bma-Chr5:49986424 1.46E-48 dispersed
Bma12g01129 Bma-Chr12:43675318 Bma08g00348 Bma-Chr8:6414917 1.53E-34 dispersed
Bma08g00348 Bma-Chr8:6414917 Bma08g00349 Bma-Chr8:6699243 9.52E-152 tandem
Bma02g00105 Bma-Chr2:951013 Bma08g00348 Bma-Chr8:6414917 1.09E-43 transposed
Bma02g01147 Bma-Chr2:53390478 Bma08g00348 Bma-Chr8:6414917 1.00E-55 transposed
Bma14g01110 Bma-Chr14:13960088 Bma08g00348 Bma-Chr8:6414917 2.59E-11 transposed
Bma10g01180 Bma-Chr10:41770526 Bma08g00348 Bma-Chr8:6414917 1.00E-62 wgd
Bma12g01138 Bma-Chr12:43816108 Bma08g00348 Bma-Chr8:6414917 4.59E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57733 PF01486 K-box 6.80E-25 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00348 - - cit:102577938 239.965