Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00349 ATGGTGAGAGGAAAAATCCAGATGAAAAAAATAGAAAATTCTGCAAGTAGGCAAGTAACGTTTTCCAAAAGAAGAAATGGGCTGCTGAAGAAAGCTTACGAGCTCTCTGTGCTGTGTGATGCTGAAGTTTCTGTCATCATTTTCTCTCAGAAAGGCAGACTCTTTGAATTTTCAAGCTCTGACATTCAAAAGACGATAGAACGTTATCAGAAGCATGTAGACGAACGACGTGGTGGGAAGGTCGACATGCATCTCTATATCGAGCAACTGAAGCATGAAGTTGCAGGCATTGCTAAACAGATTGAGCAACTAGAAGAATCAAAAAGAAAACTAATGGGACATGGATTGGGAAGTTGTTCAAATGAAGAGCTGCTGGAGATTGAGAAGCAGTTGGAGAAGAGCTTATCTTGCATTAGGCAAAGAAAGGATCAGCTGTTTAAGGAACAAATCGAGCAACTAAAAGCAAAGGAGAGACTTCTTTTAGAAGAAAATGCAAAGTTATCTATGCAGTGTGGTGGAAAAGTAATGGTGGGAGCAGCTGCAAGTGTAGACACGGTGGAGGATGCATCCTACAACAAATGTAGCCAAAGTTCACAAGCACACACCCAATTGTTCATTGGATTTCGTTACTTATAA 636 40.57 MVRGKIQMKKIENSASRQVTFSKRRNGLLKKAYELSVLCDAEVSVIIFSQKGRLFEFSSSDIQKTIERYQKHVDERRGGKVDMHLYIEQLKHEVAGIAKQIEQLEESKRKLMGHGLGSCSNEELLEIEKQLEKSLSCIRQRKDQLFKEQIEQLKAKERLLLEENAKLSMQCGGKVMVGAAASVDTVEDASYNKCSQSSQAHTQLFIGFRYL 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 6699243 6702247 + Bma027401.1 Bma08g00349 87176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00349 211 Coils Coil 150 170 - -
Bma08g00349 211 PANTHER MADS BOX PROTEIN 1 208 - -
Bma08g00349 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Bma08g00349 211 Coils Coil 87 107 - -
Bma08g00349 211 SUPERFAMILY SRF-like 3 77 IPR036879 GO:0003677|GO:0046983
Bma08g00349 211 PANTHER MADS-BOX PROTEIN SOC1 1 208 - -
Bma08g00349 211 CDD MADS_MEF2_like 3 72 IPR033896 GO:0000977|GO:0045944
Bma08g00349 211 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 Pfam K-box region 88 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma08g00349 211 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bma08g00349 211 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bma08g00349 211 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01147 Bma-Chr2:53390478 Bma08g00349 Bma-Chr8:6699243 3.96E-55 dispersed
Bma08g00349 Bma-Chr8:6699243 Bma10g01180 Bma-Chr10:41770526 2.16E-62 dispersed
Bma12g01138 Bma-Chr12:43816108 Bma08g00349 Bma-Chr8:6699243 5.23E-35 dispersed
Bma08g00348 Bma-Chr8:6414917 Bma08g00349 Bma-Chr8:6699243 9.52E-152 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57734 PF01486 K-box 6.10E-24 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00349 - - cit:102577938 236.498