Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00377 ATGGGTGATATTTTATCGGATTTTTTTGACGACAACCAATTCGGCGACACTACCAACTTGGTCGGAGACGACATTTTAAGCATTTTGGAGAGCTTGGACGACGTGGAGGAGTTTCCTGCGACGAACCAAGGTTTCAACAATGGCGGAACCTCCACTCAGAAACCTTCTTCCTCAAATGCTTTGCTGTATCTTTCAGAAACTGAGTTTGAAAACTCACCAAAGCCCAAGAGGTTGAAGACGACGAAGGAGGAAGTTAATCATCCGGATGGGCAACAGAGAATTTCTCATATTACAGTGGAGAGAAATAGAAGAAAGCAAATGAACGACCATTTGTCTGTTTTGAGGTCTCTGATGCCATGCTTTTACGTCAAAAGAGGAGATCAAGCGTCAATAATTGGTGGGGTGATAGTTTATATCAACGAGTTGCAGCAAGTTCTTCAGGCATTAGAGGCAAAGAAGCAAAGAAAAGTTTACAGTGAAATTTTAAGCCCTAGACTGATTTCACCTTCACCACTCAGCCCTAGAAAACCAGCATTAAGCCCCAGAATCACCTTACCAATCAGCCCAAGAACTCCTCAGCCAACTAGCCCTTACAAACCTAAGCTGCAAAAACCTTTCCTTTCTCCAACAATGGCGGCGGTTAATTCCGTTGAGCCTTCGCCTTCTTCTTCATCTACGTCTACTTCTGGTGCAGAGGGTTTTAATGAGCTGGTTGCTAATTGCAAATCTAGTGCGGCTGAAGTTGAGGTTAAGTTTTCTGCTCCTAATGTTCTTTTGAAGACTGTTTCTCTTAAGATTCCTGGACAAGCCATGAAAATTATTTCTGCTCTGGAAAATCTCTCCCTTGAGATTCTTCAAGTTAATGTCAATACTGTTGATGAAACCATGATTAATTCCTTCACCATCAAGATCGGAATTGAATGTCAACTAAGTGCGGAGGATCTAGCCCACAGAATTCAGCAAACCTTCTGCTAA 975 42.46 MGDILSDFFDDNQFGDTTNLVGDDILSILESLDDVEEFPATNQGFNNGGTSTQKPSSSNALLYLSETEFENSPKPKRLKTTKEEVNHPDGQQRISHITVERNRRKQMNDHLSVLRSLMPCFYVKRGDQASIIGGVIVYINELQQVLQALEAKKQRKVYSEILSPRLISPSPLSPRKPALSPRITLPISPRTPQPTSPYKPKLQKPFLSPTMAAVNSVEPSPSSSSTSTSGAEGFNELVANCKSSAAEVEVKFSAPNVLLKTVSLKIPGQAMKIISALENLSLEILQVNVNTVDETMINSFTIKIGIECQLSAEDLAHRIQQTFC 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8479415 8481063 + Bma027439.1 Bma08g00377 87204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00377 324 Pfam Helix-loop-helix DNA-binding domain 92 143 IPR011598 GO:0046983
Bma08g00377 324 MobiDBLite consensus disorder prediction 169 199 - -
Bma08g00377 324 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 324 - -
Bma08g00377 324 CDD bHLH_AtFAMA_like 94 165 - -
Bma08g00377 324 Gene3D - 82 156 IPR036638 GO:0046983
Bma08g00377 324 SMART finulus 97 148 IPR011598 GO:0046983
Bma08g00377 324 PANTHER TRANSCRIPTION FACTOR FAMA 1 324 IPR044283 GO:0003700|GO:0010052
Bma08g00377 324 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 90 162 IPR036638 GO:0046983
Bma08g00377 324 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 91 142 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00377 Bma-Chr8:8479415 Bma10g01285 Bma-Chr10:45456233 6.04E-80 dispersed
Bma02g01206 Bma-Chr2:54127610 Bma08g00377 Bma-Chr8:8479415 5.11E-50 transposed
Bma05g00711 Bma-Chr5:41189577 Bma08g00377 Bma-Chr8:8479415 2.52E-27 transposed
Bma06g01541 Bma-Chr6:51761148 Bma08g00377 Bma-Chr8:8479415 6.48E-59 transposed
Bma10g01281 Bma-Chr10:45397082 Bma08g00377 Bma-Chr8:8479415 3.38E-79 wgd
Bma14g01995 Bma-Chr14:43258483 Bma08g00377 Bma-Chr8:8479415 4.10E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57737 PF00010 HLH 1.00E-09 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00377 K20558 - qsu:112011810 394.43