Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00382 ATGGGTTATCCACCGGAGAAATCTGTGAGGTTTCAGAATTGGAATTCTGAGAAAACTACTGGTGAGTTATTTTTCACTGATGGCGGAACAAATTCAGAAAAGATCATTATTAGGGATAGATCAGTTTCAGAAAAGCTTCAAACAGGGTTTGAATCGGGGGCAAACAGATTTATAAGAATAAAGAAATCATTGAGATCATCTTCATTTAATAAATTCGTGGCCAAAGGCTTAGGTTCTGGAAATAAATTTCTTGATCCACAGGGACCTTTCCTGCAGAAATGGAACAAGATATTTGTACTGTCTTGTCTAATTGCAGTTTCACTGGATCCGTTGTTCTTTTATGTTCCTGTGATTAATGACTCGGAGAAGTGTCTTTGGTTGGATCAAAGGATGGAAATTATAGCCATTATCCTACGATCATTTACTGACATATTCTATGTAGTACATATTATTTTTCAATTTCATACTGGGTTTATTGCTCCCTCTTCCCGAGTATTTGGCAGGGGTGTTTTGGTTGAAGATTCTTGGGAAATAGCCAAGAGGTACCTGTCATCATACTTTCTAATCGATATTCTTGCAGTCCTCCCTCTACCTCAGGTGATTATTTTAATAGTCATTCCAAAATTAGGAGGCTCAAGATCGTTGAATACGAAGAATTTATTGAAATTTGTTGTCCTCTTTCAATATATTCCGAGGATTCTTAGAATTTATCCGCTATACAAAGAAGTTACAAGGACCTCTGGCATTCTAACTGAGACTGCATGGGCTGGAGCTGCATTTAATCTGTTACTTTACATGCTAGCAAGCCACGTGCTTGGAGCATTCTGGTATCTGGTTTCCATTGAACGAGAAACCACCTGCTGGCAACAAGCTTGCCGGAATCAGACTGGCTGTATTCTTGATTCATTGTATTGTGATTGGAAGAGTCCTCAAGTAAATTTATTTCTGAATACATCTTGCCCAATTCAAGACCCAGACAAGAAAAAATTTGATTTTGGAATATTCCTTGATGCTCTTCAATCTGGCGTTGTTGAGTCCATGGATTTTCCACAGAAGTTCTGTTACTGTTTCTGGTGGGGACTGAGAAATTTGAGTTCCCTTGGGCAAAATCTTGAGACAAGTACATATGTTTGGGAAATTGGCTTCGCAGTTTTCATTTCCATATCAGGCTTGGTGTTATTTGCCTTTCTCATCGGCAATATGCAGACGTATCTGCAATCAACGACCACAAGATTAGAGGAGATGAGGGTAAAAAGAAGAGATGCAGAACAGTGGATGTCACACCGCTTGCTTCCTGAGAGCCTGAGGGAGCGGATTAGAAGGTATGAACAATACAAATGGCAGGAAACTAGAGGTGTTGATGAAGAGAACCTGGTTCGAAATCTCCCCAAAGATCTTCGAAGAGACATAAAGCGGCATCTCTGCTTGGATCTTCTTATGAGAGTTCCAATGTTTGAAAAGATGGATGAACAATTGTTGGATGCAATGTGCGACCGTCTCAAACCTGTGCTCTATACAGAGGACAGTTACATTGTTCGGGAAGGTGACCCAGTGGACGAGATGCTTTTCATCATGCGGGGGAAGTTATTAACGATGACTACAAATGGCGGACGAACTGGCTTCTTCAATTCCGAGCACCTCAAAGCAGGGGACTTTTGTGGAGAAGAATTACTAACATGGGCCCTTGATCCTCACTCCTCCGTTAATCTCCCCATCTCGACTAGAACAGTTCAAGCTCTTGTAGAAGTCGAGGCCTTCGCCTTGAAAGCCGATGATTTGAAGTTTGTGGCCTCTCAGTTCCGGCGGCTTCACAGCAAACAGCTCCGCCACACTTTTAGGTTGTACTCGCAGCAATGGAGGACATGGGCCGCATGTTTCATCCAAGCAGCCTGGCGTCGCTACAGCAAAAAGAAGCTGGAAGAGTCGCTCCGCGAAGAGGAGAAGTCGATTGCAAGATGCATTGGCGAAAAACCGGTGGTTGCTCACCGAGCTTGGGTGCCACCATTTATGCATCTCGATTTGCGGCAAATGCTCTCCGTTTAA 2043 42.58 MGYPPEKSVRFQNWNSEKTTGELFFTDGGTNSEKIIIRDRSVSEKLQTGFESGANRFIRIKKSLRSSSFNKFVAKGLGSGNKFLDPQGPFLQKWNKIFVLSCLIAVSLDPLFFYVPVINDSEKCLWLDQRMEIIAIILRSFTDIFYVVHIIFQFHTGFIAPSSRVFGRGVLVEDSWEIAKRYLSSYFLIDILAVLPLPQVIILIVIPKLGGSRSLNTKNLLKFVVLFQYIPRILRIYPLYKEVTRTSGILTETAWAGAAFNLLLYMLASHVLGAFWYLVSIERETTCWQQACRNQTGCILDSLYCDWKSPQVNLFLNTSCPIQDPDKKKFDFGIFLDALQSGVVESMDFPQKFCYCFWWGLRNLSSLGQNLETSTYVWEIGFAVFISISGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPESLRERIRRYEQYKWQETRGVDEENLVRNLPKDLRRDIKRHLCLDLLMRVPMFEKMDEQLLDAMCDRLKPVLYTEDSYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEHLKAGDFCGEELLTWALDPHSSVNLPISTRTVQALVEVEAFALKADDLKFVASQFRRLHSKQLRHTFRLYSQQWRTWAACFIQAAWRRYSKKKLEESLREEEKSIARCIGEKPVVAHRAWVPPFMHLDLRQMLSV 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 8627202 8631932 + Bma027447.1 Bma08g00382 87209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00382 680 ProSiteProfiles cAMP/cGMP binding motif profile. 484 567 IPR000595 -
Bma08g00382 680 Coils Coil 636 656 - -
Bma08g00382 680 SMART cnmp_10 484 615 IPR000595 -
Bma08g00382 680 CDD CAP_ED 484 615 IPR000595 -
Bma08g00382 680 SUPERFAMILY Voltage-gated potassium channels 85 406 - -
Bma08g00382 680 SUPERFAMILY cAMP-binding domain-like 413 606 IPR018490 -
Bma08g00382 680 Pfam Ion transport protein 94 411 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bma08g00382 680 Gene3D - 97 408 - -
Bma08g00382 680 Gene3D Jelly Rolls 482 602 IPR014710 -
Bma08g00382 680 Gene3D Helix hairpin bin 410 475 - -
Bma08g00382 680 Pfam Cyclic nucleotide-binding domain 504 595 IPR000595 -
Bma08g00382 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 653 - -
Bma08g00382 680 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 653 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00382 Bma-Chr8:8627202 Bma12g01200 Bma-Chr12:44952681 0 dispersed
Bma12g01197 Bma-Chr12:44907606 Bma08g00382 Bma-Chr8:8627202 1.53E-64 dispersed
Bma14g01609 Bma-Chr14:33788190 Bma08g00382 Bma-Chr8:8627202 4.98E-145 dispersed
Bma01g02496 Bma-Chr1:82671441 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma08g00170 Bma-Chr8:2120933 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma10g00518 Bma-Chr10:6008200 Bma08g00382 Bma-Chr8:8627202 1.81E-116 transposed
Bma11g00180 Bma-Chr11:1621434 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma11g00643 Bma-Chr11:11110782 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma11g00665 Bma-Chr11:12624647 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma13g00522 Bma-Chr13:10439032 Bma08g00382 Bma-Chr8:8627202 0 transposed
Bma14g01442 Bma-Chr14:27763955 Bma08g00382 Bma-Chr8:8627202 1.70E-120 transposed
Bma14g01461 Bma-Chr14:28213055 Bma08g00382 Bma-Chr8:8627202 2.26E-71 transposed
Bma15g00425 Bma-Chr15:4604835 Bma08g00382 Bma-Chr8:8627202 5.93E-49 transposed
Bma10g01292 Bma-Chr10:45870772 Bma08g00382 Bma-Chr8:8627202 3.63E-136 wgd
Bma12g01196 Bma-Chr12:44900779 Bma08g00382 Bma-Chr8:8627202 6.31E-111 wgd
Bma14g02001 Bma-Chr14:43378290 Bma08g00382 Bma-Chr8:8627202 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00382 K05391 - rcu:8274372 1065.83