Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00386 ATGCAATTACCTTCCGAAGGAAAGAGGCCAAAGAATCTGAAGCGTTCGAGATCCAATCCACACCACATGGCTGTCACTGGCTCCATTAATTCCTACAGCCTAGAAGACGATGTTCTTTTCCCTGTTGAAGAGATTGTACAATCTCCATTGCCTGGATATGGCGCCCCCACTTCAATAAGTTTCAGTTTTGATGATAGTTTAATTACTTATTTGTTCAGTCCTGATCATACTTTAAACAGAAAGGTTTTTGCTTTTGATCCTAAAACTGGCAAAGAAGACTTGATATTTAGTCCCCCACACGGGGGGCTCGATGAGAGTAATATATCACCTGAAGAGAAGTTAAGGAGGGAAAGATTGAGAGAACGCTGGTTGGGAGTGACTCGGTACGAATGGGTGAAGACAAGCTTAGATCGGAAATCTATAATGGTGCCTTTTCCTAATGGGGAGCTTTGTAACTCAAGCCCAAAGTTTAAGCTTTTGTTAGAAAAGCTTCCAAGCCAACCGTGTTCACCAATCATTGATCCACACCTTTCACCAGATGGTTCAATGCTCGCTTATGTTAGAGATGGTGAGTTGCATGTTATGAACCTATCTGGCGATGAAATCAAACAGTTGACATTTGGGGCCAACGGGAACACTTTGACTCATGGCCTTGCTGAGTATATAGCTCAGGAGGAGATGGATAGGAAGAATGGATATTGGTGGTCATTGGACAGCCAATTTATTGCATTTACGGAAGTCGATTCTTCGGACATACCTCTTTTCAGAATCATGCATCAAGGTAAAAGCACCGTCGGTTCGGAAGCACAAGAAGACCACTTCTATCCCTTTGCAGGAGCTTCTAACGTCAAAGTTCGACTTGGGGTGGTTTCTTCCGGCGGAGGTGCTATTTCTTGGATGGATCTTCTCTGTGGAGTAACTGAGGAGGACCAGTATCTAGCCAGAGTCAATTGGATGGTAGGAGATGTTCTAACAGCTCAGGTTTTGAATCGGTCACATTCAAAGTTAAGACTCCTCCAGTTCGACATCAAGTCGGGCAAAAAAAAAGTTGTCTTGGTAGAGGAACAACTCCCTTGGGTTAATTTGAACGATTGCTTCACCCCACTCGGTAAAGATGTTACTAATTCCACCGGAGGCTTCATCTGGGCTAGTGAGAAAACAGGGTTCAGGCATCTTTACTTGCACGATGCGAATGGAGAGTGCCTTGGTCCAATCACAGGTGGAGATTGGATGGTCGAACGAATTGCCGGTGTAAATGACGCAGCCGGGCTTGTCTACTTTACTGGAACATTAGACGGGCCATTGGAGTCGAATCTTTACTACGCCAAACTATTAAAAGCTGGGAACGAATCTTTGGATCCGCCAGTGAGATTGACTCAAGGCAAGGGAAAGCACTTAGTGGTTCTGGATCATCAAATGCAAATGTTTGTAGATACACACGATTCCCTTGATCATCCCCCGAGGGTGTTACTTTGCTCGTTACAAGATGGAAGCATTATTATGCCTATTTACGACCGGCCAATTACGACTCCTAGGTACAACAGGCTTCAGCTTGAGCCTCCAGAGATAGTTACATTACAAACTAAGAATGGAACTGTACTATATGGAGCTTTGTATAAGCCTGATGAAACAAGATTCGGACCGCCTCCGTACAAAACTTTGATCAGTGTCTATGGAGGTCCAAGCGTCCAAACAGTTTGTGATTCTTGGATTAACACAGTTGACATGAGAGCACAGTATCTCAGAAGGAAAGGGATCTTGGTGTGGAAGTTAGACAACAGGGGAACTGCTCGACGAGGACTGGAATTCGAAGGCTCTTTGAAATGTAATATCGGCCAGGTCGATGCAGATGACCAGGCTGTCGGAGCTGAGTGGCTAATCAGACAGGGGTTGGCTCGAGCGGGGGAGATTGGCTTGTATGGATGGAGTTATGGTGGGTTTCTCTCAGCCATAGCACTGGCCAGGTTCCCCGATATTTTCAGTTGTGCAGTCTCTGGTGCCCCCGTAACTTCATGGGACGGCTACGACACGTTTTACACTGAGAAATACATGGGTTTGCCTAGTGAGAACGAGACGGCTTATGAGCATGGATCTGTGATGCACCATGTGGCTAACATGAAAGGGAGGGTGTTGCTGGTTCATGGGATGATCGATGAAAATGTTCACTTTCGGCACACTGCACGGCTAGTTAACGCTCTTGTAGGTGCTGGAAAGCCGTACGAGATTTTGATTTTTCCGGATGAACGGCACACGCCTCGCAGGAACAGAGATCGCATATATATGGAACAAAGGATATGGGAATTCATTGAGAGGAACTTGTAA 2322 45.61 MQLPSEGKRPKNLKRSRSNPHHMAVTGSINSYSLEDDVLFPVEEIVQSPLPGYGAPTSISFSFDDSLITYLFSPDHTLNRKVFAFDPKTGKEDLIFSPPHGGLDESNISPEEKLRRERLRERWLGVTRYEWVKTSLDRKSIMVPFPNGELCNSSPKFKLLLEKLPSQPCSPIIDPHLSPDGSMLAYVRDGELHVMNLSGDEIKQLTFGANGNTLTHGLAEYIAQEEMDRKNGYWWSLDSQFIAFTEVDSSDIPLFRIMHQGKSTVGSEAQEDHFYPFAGASNVKVRLGVVSSGGGAISWMDLLCGVTEEDQYLARVNWMVGDVLTAQVLNRSHSKLRLLQFDIKSGKKKVVLVEEQLPWVNLNDCFTPLGKDVTNSTGGFIWASEKTGFRHLYLHDANGECLGPITGGDWMVERIAGVNDAAGLVYFTGTLDGPLESNLYYAKLLKAGNESLDPPVRLTQGKGKHLVVLDHQMQMFVDTHDSLDHPPRVLLCSLQDGSIIMPIYDRPITTPRYNRLQLEPPEIVTLQTKNGTVLYGALYKPDETRFGPPPYKTLISVYGGPSVQTVCDSWINTVDMRAQYLRRKGILVWKLDNRGTARRGLEFEGSLKCNIGQVDADDQAVGAEWLIRQGLARAGEIGLYGWSYGGFLSAIALARFPDIFSCAVSGAPVTSWDGYDTFYTEKYMGLPSENETAYEHGSVMHHVANMKGRVLLVHGMIDENVHFRHTARLVNALVGAGKPYEILIFPDERHTPRRNRDRIYMEQRIWEFIERNL 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9324616 9328443 - Bma027456.1 Bma08g00386 87213

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00386 773 Pfam Prolyl oligopeptidase family 574 773 IPR001375 GO:0006508|GO:0008236
Bma08g00386 773 MobiDBLite consensus disorder prediction 1 25 - -
Bma08g00386 773 PANTHER PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED 39 763 - -
Bma08g00386 773 Pfam Dipeptidyl peptidase IV (DPP IV) N-terminal region 164 487 IPR002469 GO:0006508
Bma08g00386 773 Gene3D alpha/beta hydrolase 516 772 IPR029058 -
Bma08g00386 773 PANTHER DIPEPTIDYL-PEPTIDASE 4-RELATED 39 763 - -
Bma08g00386 773 SUPERFAMILY alpha/beta-Hydrolases 520 773 IPR029058 -
Bma08g00386 773 Gene3D - 41 515 - -
Bma08g00386 773 SUPERFAMILY DPP6 N-terminal domain-like 52 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00386 K01278 DPP4, CD26; dipeptidyl-peptidase 4 [EC:3.4.14.5] - vvi:100241749 1214.52
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00754 Bma-Chr4:8111670 Bma08g00386 Bma-Chr8:9324616 3.43E-07 dispersed
Bma05g00097 Bma-Chr5:3174526 Bma08g00386 Bma-Chr8:9324616 1.10E-07 dispersed
Bma08g00386 Bma-Chr8:9324616 Bma04g00233 Bma-Chr4:1997447 5.89E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1044 Blo06g01060 . . . . . . . . . Cma02g01118 . Car02g00927 Car15g00959 . Cpe05g00600 . . . . . . . . Cla01g00044 Cam01g0041 Cec01g0040 Cco01g0042 Clacu01g0043 Cmu01g0041 Cre09g2466 . . Cone14ag0013 Cone15ag0015 . Csa05g00050 Chy09g01438 . . . . Bda15g00784 . Bpe12g00351 Bma08g00386 . . Cmo02g01146 Cmo15g01088 . . . . . Cpe13g00316 Bhi12g00638 . . . . . . . . . . . . . Lsi09g00022 . . Cme09g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002992 2 7 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 11 1 53
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00386 Bma_Chr08 FPKM 3.28194 3.894441 8.334218 8.597245 73.672539 73.112747 76.483139 5.478491 4.88199 4.843561