Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00388 ATGGATTCTCTGCATATTGCTCCTCTTCTTTCATGCCCACCATCCTTTAATACTAAACTATCAAGAACTTGCCTTATTTCTGGAGTGATCACTCGCCTCTTTCAAATTCCTCTAGGCAGGAAGACTCGTTCAATCGGTCGTTTAAAGCTTACTGCTTCGATTTCGGGTGGAAGGGCATGTGATGTTGGTGGGTATCCGGATGGGTCTTGTGATATCGAAGACAATAACAAGGGAAAAAACGGTTTCGTCTTCGATTCTGAGAGAGATGCTTCTGGCTCTGTGGTTGGGTTTAATTTGATATCTAAACCTGGTGGAAATAATGAAGAAGTTGTCTTAAATAAAGACTTGAAAGCTGATACGGGTGAAGATCAGGATAAAAAGGAAGAAAAGCCCTACGTTAAAGTAACATACAATGTTATCTTTGTAACCTCTGAAGCATCACCATACTCAAAGACGGGAGGCTTGGGAGATGTTTGTGGTTCCTTGCCAATAGCTTTAGCTGCCCGTGGACACAGAGTGATGGTAGTTTGTCCTAGATATCTACATGGCACTCCCGCTGACAAAAAATTTGCCAGGGCTGTCAATTTGGATACTCGCATCAAGTTACATTGCTTTGGAGGAGAGCAAGAAGTAGCTTTCTTTCATGAATACAGAGAGGGTGTTGATTGGGTATTTGTGGATCACCCTTCATACCAAAGACCTGGAAATCCATATGGGGACGTGTATGGAGCATTTGGCGACAATCAGTTTCGGTTCACTTTACTTTGCCATGCTGCATGTGAAGCTCCTCTAGTTCTTCCTTTGGGTGGATTCACCTATGGGGAGAAATGTCTTTTCCTTGTCAATGACTGGCATGCAGGACTTGTGCCATTACTTTTGGCAGCCAAGTATAGGCCACATGGAATTTATAAGGATGCCAGAAGCATCCTCGTCATCCACAATCTTGCTCATCAGGGCGTTGAACCTGCAGTAACATACAAGAATATCGGGCTCCCTCTAGAGTGGTATGGAGCCCTGGAATGGGTATTCCCAACCTGGGCAAGAACACATGCTCTCGACACTGGTGAAGCCGTCAATATTTTAAAGGGTGCGATTGTGACAGCCGATCGCATTTTGACAGTTAGCAAGGGTTATTCTTGGGAAATTACGACAGCAGAAGGTGGATATGGCTTACAAGATTTATTAAGCAGTCGAAAGAGTGTTCTTGATGCAGGGATTACAAATGGAATCGATGTTTTTGAATGGAATCCATCTTCAGATGTACATATTCCCTCCCATTATTCTCTTGAGGATCTTTCTGGAAAGGTTAAATGCAAGATTACTCTGCAAAAGGAATTAGGTCTTCCAATTAAGCCCAGTTGCCCATTGATTGGATTCATTGGACGACTTGACTATCAAAAAGGCATTAACTTGATTCAGGCGGCTATGCCTGAGCTTATGGAAGAAGACGTGCAATTTGTTATGCTTGGTTCTGGTGATCCACGGTATGAATCCTGGATGAGAGCAACTGAGTCGGCTTATAGAGACAAGTTCCGAGGTTGGGTGGGATTTAACGTTCCAATGTCTCATAGGATAACAGCAGGCTGTGACATATTGTTAATGCCTTCGATATTCGAGCCATGCGGACTAAACCAATTGTATGCAATGAGATATGGAACTGTCCCAGTGGTTCATAACACCGGAGGACTACGAGATACGGTCTTGAATTTTGATCCGTATGCACAGAAAGGACACGGTTCAGGGACTGGGTGGACTTTTTCGCCACTGGCAAAAGAGAGTATGTTGGGGGCGTTGAGGCTGGCAATCATGACTTACCGGGATCACAAGTCTTCATGGGAGGGATTGATGAAGAGAGGTATGCAGAGGGATTGCACCTGGGAAAATGCTGCCATCCAGTATGAACAGGTGTTCCAATGGGCTTTCATTGATCCTCCCTATTGTAAT 1944 44.19 MDSLHIAPLLSCPPSFNTKLSRTCLISGVITRLFQIPLGRKTRSIGRLKLTASISGGRACDVGGYPDGSCDIEDNNKGKNGFVFDSERDASGSVVGFNLISKPGGNNEEVVLNKDLKADTGEDQDKKEEKPYVKVTYNVIFVTSEASPYSKTGGLGDVCGSLPIALAARGHRVMVVCPRYLHGTPADKKFARAVNLDTRIKLHCFGGEQEVAFFHEYREGVDWVFVDHPSYQRPGNPYGDVYGAFGDNQFRFTLLCHAACEAPLVLPLGGFTYGEKCLFLVNDWHAGLVPLLLAAKYRPHGIYKDARSILVIHNLAHQGVEPAVTYKNIGLPLEWYGALEWVFPTWARTHALDTGEAVNILKGAIVTADRILTVSKGYSWEITTAEGGYGLQDLLSSRKSVLDAGITNGIDVFEWNPSSDVHIPSHYSLEDLSGKVKCKITLQKELGLPIKPSCPLIGFIGRLDYQKGINLIQAAMPELMEEDVQFVMLGSGDPRYESWMRATESAYRDKFRGWVGFNVPMSHRITAGCDILLMPSIFEPCGLNQLYAMRYGTVPVVHNTGGLRDTVLNFDPYAQKGHGSGTGWTFSPLAKESMLGALRLAIMTYRDHKSSWEGLMKRGMQRDCTWENAAIQYEQVFQWAFIDPPYCN 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9456111 9460979 + Bma031442 Bma08g00388 87215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00388 648 Pfam Starch synthase catalytic domain 138 396 IPR013534 -
Bma08g00388 648 Gene3D Glycogen Phosphorylase B; 157 637 - -
Bma08g00388 648 PANTHER GRANULE-BOUND STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 76 647 - -
Bma08g00388 648 CDD GT5_Glycogen_synthase_DULL1-like 138 639 - -
Bma08g00388 648 Gene3D Glycogen Phosphorylase B; 412 623 - -
Bma08g00388 648 TIGRFAM glgA: glycogen/starch synthase, ADP-glucose type 138 638 IPR011835 GO:0004373
Bma08g00388 648 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 128 636 - -
Bma08g00388 648 Pfam Glycosyl transferases group 1 455 594 IPR001296 GO:0016757
Bma08g00388 648 Hamap Glycogen synthase [glgA]. 137 640 IPR011835 GO:0004373
Bma08g00388 648 PANTHER STARCH SYNTHASE 1, CHLOROPLASTIC/AMYLOPLASTIC 76 647 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00388 K00703 glgA; starch synthase [EC:2.4.1.21] - twl:119985389 972.615
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01038 Bma-Chr1:10868919 Bma08g00388 Bma-Chr8:9456111 3.78E-11 dispersed
Bma02g00394 Bma-Chr2:6106191 Bma08g00388 Bma-Chr8:9456111 3.30E-133 dispersed
Bma05g00540 Bma-Chr5:29107140 Bma08g00388 Bma-Chr8:9456111 1.42E-104 dispersed
Bma08g00388 Bma-Chr8:9456111 Bma12g00419 Bma-Chr12:9453780 2.59E-91 dispersed
Bma08g00388 Bma-Chr8:9456111 Bma02g00423 Bma-Chr2:6403979 3.24E-162 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1036 Blo06g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0986 Cone5ag0692 . . . . . . . . . Bda15g00786 . Bpe12g00350 Bma08g00388 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016620 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 1 7
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00388 Bma_Chr08 FPKM 14.878592 15.204485 14.670447 14.788785 66.548622 66.122444 70.092133 18.014994 15.718075 16.328432