Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00392 ATGGATAGCTTCAGCGACGACGAAGAATCTCGATTTTTTGATGCCCAAGAGGATATTGCGTCGTCTTCTGTAGCGAATAGGGATAGTTTTGAGGTTCAAAATTCTAATTTTGGTTTTAGCGCTGCCGTTGAGGGTAGTTTTGTGTATGATGTATGGAAGCGAAGCCCTCTCAGTGTTAAAGAGCGCCGGACAAAGTTTTTGAGAATGATGGGACTAAGTTTGGATGGGATTTCCCTCGATAATTCTGTAGTTGGTTGGAGGGATTTGAGTGATGGAGAAGCGAGTACAATCAGGGAAAATGAAGGGTCTATGGTCGGAATTTCAGCTTTCGAAGATAGATTTTATTTGAGCCGTTCATCAATGTCATGTTACCCTAGTGATAGCCGTGGATTTTCAGAGAAATTGGGATCAAATTTGAATTTTGTAAGCAGCGACGAAACAAAAGTTTGTAATCCGGGTAGGACAGGGGCAGCCAGGGGGTTTGGGATGGTGAATGAAGATGGCAGCTCAGTCCAGTTGGGAATAGCCGAAGAGTATTCAAGCAGTTGTTCATCTCAATCGTCCCATAACCAGAAGGAAGCGGAAAGTGGAAATCAAAGGCGCTTCAAGTGCATGGTTAGAAGAGTCGATAAGAGTTGGCTGAGGAGATTACGCTCTATGACATGTATTTTTGATAACCAAGGCAAAGGACTTAAATTCATGTCAGATGATGATGGCGATGATGATGCAGTTCGGCAGCTTAGAATTCAGAGAGTTAAGGTTCGGCAATGCAGGAAGCAACTGAGGGAACTTTCTGCTGTCTATATGGGTCATGATATTCAGGCACATGAAGGTGCAATATTGACCATGAAATTCAGTCTGGATGGGCAGTACCTGGCCAGTGGGGGTGAAGACAGGATTGTGAAAATTTGGCAAGTGATCGAGGACCAGAGGTCCAATGAAAGTGATATTCCGGAATTAGATCAATCGTGCATTTACTTTTCTGTGAATCAACTCTCTGAATTGAAACCTCTGCTTGTGGACAAAGAAAAACTTTGTGATTCAACAAGTTTGAAGAAAACATCAGAATCAGCTTGTGTCATTTTCCCACCCAAAATCTTTAGAATATTGGAGAAACCGTTACACGAATTCCATGGTCACAGTTGTGAGATTTTGGATCTCTCGTGGTCACAGAACAATTATCTCCTTTCATCATCAGTTGACAAAACAGTTCGCCTTTGGCAAGTCGGAAGGGAAGATTGCCTCAAAGTGTTTTCACATAGCAATTACGTGACATGCGTGCACTTTAATCCCGTGGATGAAAATTACTTCATCAGTGGATCAATAGATGGAAAAGTACGGATCTGGGGAATCTCTTGTTCTCAAGTTGTTGATTGGACTGACATTAGAGAAATAGTCACTGCAGTGTGTTTTCGCCCTGATGGACAGGGAAGTGTTGTCGGATCACTTGATGGAAGCTGCCGCTTTTATAATATATCAGAAAATCATCTGCAATTGGAAGATCAGATATGCTTACACAGCAAGAAGAAGACAGTGTGTAAGAAGATAACAAGCTTTCAGTTTCTTCCTCAAGATTCAAGCATGGTAATGGTGAGCTCTGCTGATTCGAGAATCAGAATTCTTCATGGTCCTAAGGTGGTTGGTAAATACAAGGGAATTCGAATTGCTGGAAACAATATTGCTGCATCTTTTACGCCGGATGGTAAATATATTATCTCAGCTTGTGGGGATTCTAATGTCTATGTATGGAACTGTGGGGACCAAAATGACAGTGCTTTATCTCAAACTAGAAAAAGTTATGAACACTTCTCCACCAATGCTTCCATTGCAATACCTTGGAGTGGTTTTGGATGCCATAATTCAAACAGTGGAAGGCAATTTTGTGGCTTGGACAAGAGTTTACCAGAGCTTCTCCCTTTCTCTTCATCCCCATGTTTCTCACTGAACCAGGAATTCTTTCTAGAGTCTTTGCCTAAAGGGTCTGCTACTTGGCCCGAAGAGAAGCTTCCTACTTCGGTAAAGACGTCAAGGATGCATAAATCTCAATACAAGTTTCTCGAGGAGTCTTGCCATAACACTTCTGGGTCCCACACATGGGGTCTAGTTATTGTGACTGCCGGTTGGGACGGTCGCATAAGATCATATCACAGTTATGGATTACCAGCACCCATTTGA 2175 42.39 MDSFSDDEESRFFDAQEDIASSSVANRDSFEVQNSNFGFSAAVEGSFVYDVWKRSPLSVKERRTKFLRMMGLSLDGISLDNSVVGWRDLSDGEASTIRENEGSMVGISAFEDRFYLSRSSMSCYPSDSRGFSEKLGSNLNFVSSDETKVCNPGRTGAARGFGMVNEDGSSVQLGIAEEYSSSCSSQSSHNQKEAESGNQRRFKCMVRRVDKSWLRRLRSMTCIFDNQGKGLKFMSDDDGDDDAVRQLRIQRVKVRQCRKQLRELSAVYMGHDIQAHEGAILTMKFSLDGQYLASGGEDRIVKIWQVIEDQRSNESDIPELDQSCIYFSVNQLSELKPLLVDKEKLCDSTSLKKTSESACVIFPPKIFRILEKPLHEFHGHSCEILDLSWSQNNYLLSSSVDKTVRLWQVGREDCLKVFSHSNYVTCVHFNPVDENYFISGSIDGKVRIWGISCSQVVDWTDIREIVTAVCFRPDGQGSVVGSLDGSCRFYNISENHLQLEDQICLHSKKKTVCKKITSFQFLPQDSSMVMVSSADSRIRILHGPKVVGKYKGIRIAGNNIAASFTPDGKYIISACGDSNVYVWNCGDQNDSALSQTRKSYEHFSTNASIAIPWSGFGCHNSNSGRQFCGLDKSLPELLPFSSSPCFSLNQEFFLESLPKGSATWPEEKLPTSVKTSRMHKSQYKFLEESCHNTSGSHTWGLVIVTAGWDGRIRSYHSYGLPAPI 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9571394 9574825 - Bma027465.1 Bma08g00392 87219

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00392 724 PRINTS G protein beta WD-40 repeat signature 395 409 IPR020472 -
Bma08g00392 724 PRINTS G protein beta WD-40 repeat signature 437 451 IPR020472 -
Bma08g00392 724 PRINTS G protein beta WD-40 repeat signature 292 306 IPR020472 -
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 563 584 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 266 305 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 370 408 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 452 491 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 411 450 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 543 584 IPR001680 GO:0005515
Bma08g00392 724 SMART WD40_4 506 542 IPR001680 GO:0005515
Bma08g00392 724 Pfam WD domain, G-beta repeat 561 584 IPR001680 GO:0005515
Bma08g00392 724 Pfam WD domain, G-beta repeat 413 449 IPR001680 GO:0005515
Bma08g00392 724 Pfam WD domain, G-beta repeat 372 407 IPR001680 GO:0005515
Bma08g00392 724 Pfam WD domain, G-beta repeat 273 304 IPR001680 GO:0005515
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 409 - -
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 417 452 - -
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 417 452 IPR001680 GO:0005515
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 273 314 IPR001680 GO:0005515
Bma08g00392 724 SUPERFAMILY WD40 repeat-like 271 714 IPR036322 GO:0005515
Bma08g00392 724 PANTHER WD REPEAT DOMAIN 44 6 723 IPR040324 -
Bma08g00392 724 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 723 - -
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 273 306 - -
Bma08g00392 724 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 417 IPR001680 GO:0005515
Bma08g00392 724 Gene3D - 258 611 IPR015943 GO:0005515
Bma08g00392 724 CDD WD40 271 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00392 - - - qsu:112008846 840.876
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00392 Bma14g02015 CCT
Bma08g00392 Bma10g01307 CCT
Bma08g00392 Bma14g02015 ECH
Bma08g00392 Bma10g01307 ECH
Bma08g00392 Bma12g01219 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00392 Bma-Chr8:9571394 Bma15g00824 Bma-Chr15:20240482 2.49E-126 dispersed
Bma12g00551 Bma-Chr12:22971357 Bma08g00392 Bma-Chr8:9571394 2.50E-12 dispersed
Bma14g00292 Bma-Chr14:3643854 Bma08g00392 Bma-Chr8:9571394 2.09E-85 transposed
Bma10g01307 Bma-Chr10:46463325 Bma08g00392 Bma-Chr8:9571394 0 wgd
Bma12g01219 Bma-Chr12:45091080 Bma08g00392 Bma-Chr8:9571394 0 wgd
Bma14g02015 Bma-Chr14:43527149 Bma08g00392 Bma-Chr8:9571394 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1012 . Blo15g00080 Bda05g00130 Bda07g01942 Bpe03g00197 Bpe07g01024 Bma10g01307 Bma14g02015 . . Cma02g01133 Cma15g01017 Car02g00936 Car15g00952 . Cpe05g00590 . . . . . . . . Cla01g00031 . Cec01g0028 Cco01g0030 Clacu01g0030 Cmu01g0029 Cre09g2477 Cone1ag0999 Cone5ag0704 . . . . . . Blo07g00327 Blo09g00017 Bda06g00793 Bda15g00789 . Bpe12g00345 Bma08g00392 Bma12g01219 . Cmo02g01161 Cmo15g01081 . . . . . Cpe13g00320 Bhi12g00667 . . . Hepe06g0808 . . . . . . . . . Lsi09g00011 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003050 4 4 3 4 3 0 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 4 1 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00392 Bma_Chr08 FPKM 8.386196 9.30859 9.732738 9.80797 10.573149 13.498399 11.584741 12.235147 13.16705 12.112187