Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00393 ATGAAAATGGCGTTCAGACGCAGAACCCAGGCACCTAAGCCTCACTCTCGCTCTCATTCTGATGAATACGCCGACGTTTTGTGTGAGGTCTGTGGTTCTGGTGAGAGTCCTGGTGAGCTTCTTCTCTGCGACAAATGCGACGGAGGATACCACCTCTTTTGTCTTAGACCCATCCTCGTTGCTGTTCCTAAAGGCTCTTGGTTTTGTCCCTCCTGCTCCAACAACAAGCAGCTCGTTCATTTCCCACTCATTCAAACCAAAATTGTTGATTTCTTTCGCATCCAAAGGAATGCATGTTCCATCAACATAGCAAAGGAAGATAGCAAAAAGAAGCGGAAACGTACAAGTAGCTTAGTACTAGCGAAAAAGAAACGAAAACTTCTTGCATTTAACCCAAGTGAGGATCCAACCCGAAGGCTAGAACAAATGGCATCACTGGCCTCAGCGTTGATGGCTACCAAAGCGGAGTTTAGTAACGAGCTTACTTACATTCCTGGCATGGCACGGAGGTCAGCTAATTGTGCGAATTTGGAGCAAGAAGGAATGCAGGTACTCTCAAAAGAGGACACTGAAACATTCGAGCTGTGCAGAAGAATGATGGAGAGAGGGGAATGGCCTCCCCTTATGGTTGTTTTTGATCCTCAAGAAGGGTTCACAGTCGAGGCAGATAGATTTATAAAGGATTTAACAATAATTACTGAATATACTGGAGATGTTGATTACTTGAAGAACCGTGAAAACGATGATGGTGATAGCATGATGACGCTACTTTGTGCTTCCGATCCTTCAGAAAGACTAGTAATTTGTCCTGATAAGCGCAGTAACATTGCTCGATTCATTAACGGCATCAACAATCATACACCGAACGGTAAAAAGAAGCAAAATCTCAAGTGTGTGAGGTACAATGTGGATGGTGAGTGCAGGGTTTTACTGATTGCAAATAGAGACATAGCAAAGGGAGAGAGATTGTATTATGACTACAACGGGTATGAGCATGAATACCCCACTGAGCACTTCGTCTAG 1023 44.18 MKMAFRRRTQAPKPHSRSHSDEYADVLCEVCGSGESPGELLLCDKCDGGYHLFCLRPILVAVPKGSWFCPSCSNNKQLVHFPLIQTKIVDFFRIQRNACSINIAKEDSKKKRKRTSSLVLAKKKRKLLAFNPSEDPTRRLEQMASLASALMATKAEFSNELTYIPGMARRSANCANLEQEGMQVLSKEDTETFELCRRMMERGEWPPLMVVFDPQEGFTVEADRFIKDLTIITEYTGDVDYLKNRENDDGDSMMTLLCASDPSERLVICPDKRSNIARFINGINNHTPNGKKKQNLKCVRYNVDGECRVLLIANRDIAKGERLYYDYNGYEHEYPTEHFV 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9578476 9580866 - Bma027466.1 Bma08g00393 87220

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00393 340 ProSiteProfiles SET domain profile. 206 328 IPR001214 GO:0005515
Bma08g00393 340 Pfam PHD-finger 28 74 IPR019787 -
Bma08g00393 340 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR6 3 337 - -
Bma08g00393 340 SMART PHD_3 27 73 IPR001965 -
Bma08g00393 340 PANTHER HISTONE ACETYLTRANSFERASE 3 337 - -
Bma08g00393 340 CDD PHD_RSF1 27 72 - -
Bma08g00393 340 ProSitePatterns Zinc finger PHD-type signature. 28 72 IPR019786 -
Bma08g00393 340 CDD SET_ATXR5_6-like 203 340 - -
Bma08g00393 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Bma08g00393 340 Gene3D SET domain 112 340 IPR046341 -
Bma08g00393 340 SUPERFAMILY SET domain 173 328 IPR046341 -
Bma08g00393 340 SMART set_7 206 334 IPR001214 GO:0005515
Bma08g00393 340 Pfam SET domain 151 328 IPR001214 GO:0005515
Bma08g00393 340 ProSiteProfiles Zinc finger PHD-type profile. 25 75 IPR019787 -
Bma08g00393 340 SUPERFAMILY FYVE/PHD zinc finger 16 77 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00393 K24406 ATXR5_6; [histone H3]-lysine27 N-methyltransferase [EC:2.1.1.369] - jre:108994017 535.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02095 Bma-Chr1:77017734 Bma08g00393 Bma-Chr8:9578476 7.88E-09 dispersed
Bma03g01031 Bma-Chr3:11944121 Bma08g00393 Bma-Chr8:9578476 3.23E-149 dispersed
Bma04g01206 Bma-Chr4:33363141 Bma08g00393 Bma-Chr8:9578476 5.17E-06 dispersed
Bma08g00393 Bma-Chr8:9578476 Bma11g00075 Bma-Chr11:844021 8.65E-09 dispersed
Bma10g01210 Bma-Chr10:42769162 Bma08g00393 Bma-Chr8:9578476 8.32E-07 dispersed
Bma08g00393 Bma-Chr8:9578476 Bma10g00374 Bma-Chr10:3484993 2.20E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g1011 Blo06g01057 . . . . . . . . . . Cma15g01016 Car02g00937 Car15g00951 . Cpe05g00589 . . . . . . . . Cla01g00030 Cam01g0029 Cec01g0027 Cco01g0029 Clacu01g0029 Cmu01g0028 Cre09g2478 . . . . . . . . . . . Bda15g00790 . Bpe12g00344 Bma08g00393 . . Cmo02g01162 Cmo15g01080 . . . . . Cpe13g00321 Bhi12g00670 . . . Hepe06g0809 . . . . . . . . . Lsi09g00010 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001827 2 3 2 2 2 2 5 2 2 2 2 2 3 2 2 4 2 2 4 2 2 2 2 1 1 2 2 4 1 2 68
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57740 PF00856 SET 6.90E-05 No_clan Bma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00393 Bma_Chr08 FPKM 0.0 0.0 0.0 0.0 0.290536 0.0 0.555838 0.0 0.756711 0.724192