Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00399 ATGGAGGCCACGGCCACCGAACGCGGGGGTTCGTTGCCGACACACCAGCCACCAAAGAAGTGGGGTTCTATTGCCGACCATCATCCGGTTCTTGATCCCCTGGATGAGGAATTAGAAAATTTGAAGTCAGGGCAATCAGATGAGAGAACTATTTATGAGGTGCAGCAGGGACGAGAGCCTTTTGACATGGACTTCTGTTCAATCTCAATTGATGGAAATCTCAACAGTGACATTTTGCAGCAGCGGCTACATGGCATTGCTAGACAAAGAGATGAATTGCAACAAATGGAGATTGAGCTTAGAGCTCAAATTATTGCAAGATCTGAGATATTTAATATGCAGAATAAATTTGATTGTCAAATTAAAGAACATAATATTACTATGATCAAGCTCCAGGAACAACTCCGTGGAAGGGAACAGACCATTTGTGAATTGGAAAGAAAAGTTGAAGATAAAGATAGAGAGCTCCACGCAATCAAATTAGACAATGAAGCGGCTTGGGCCAAGGAGGATCTTTTTAGAGAACAAGATGAAGAACTAGCGACATACAGAAGAGAGAGAGATCATTCTGAAGCTGAAAGATCTCAACATGTGAAACAAATACATGATTTTCAAGAGCATATCCTAGAAAAAGAGAGGCAGATTATTGAGTTAAAAGAACAGCATAGGGTTTCTCAAGAAACTATTGTCTATAAAGATGAGCAATTAAGGGAAGCCCATGCTTGGATTGCTCGAGTTTGGGACATGGATGCTTTGCATTCAACTACAAATCATTCATTGCAAGCTGAACTCCGCGAACGAACAGAGCAATACAACCAACTATGGGTTGGCTGCCAGCGCCAGTTTGCGGAAATGGAGAGACTCCATCTGCATTCAATTCAGCAGCTTCAACTTGAGCTGGCTGATATAAGAGAGAGGAGTGGAACATTCAATGATGGGTCTGGGTCACAGACTTCCCAAACAAATTTAAAAGATGATTCTCAATATGGAAAGACCAATGGACCCCAACTAGATACTAATGGAATATCAATTGCCAGTGGAAATACAGGGGCTTTATCAAATGAGAGTTCACATGATGTTCTGTCTTTTTCTTCCACCGGGAATGCATTAAGTCAGGGGGACCAGGTTCCCAGTGTTCCACCAGCTCCTTCACTTCTTGGGGTACCTACCTACCTTACCTCTGGGCAGGTGACTGCTATTCATCCATTTTTGATGCATCGACCGGGCGTTCCTCAATCTATTGTCAGTCATTTTCACTCAGCACCAATTTCGTCCTTCCAACAATGGCAAAGCCAACTGGTATTGCCAATTCCGGAGAATGATCTTCAATTATCCCAAAATGATCAAGAACTTAAAAGATCAACTGCTAAAGCCAACTATGAGATGTCAGTTACTGGGCTAGGTCTTCATTCTGACTATCTGAATGGCCAAAATGGTGAAATAGGGAAACATGATTCAGCAATTTTGCCATCAACTGAAGGAGCACAGGTTGATTCTATTGATCAAAGGCTCTTAATTGTCTCTCAACCTGAACAGAACCTACAACATGTTTCCTCTCAATTTCGCAATGCTTTAAGACTAGATACTCTTGAACATAAGACTGAAGCACAGGAGAAAAATGCTTCGACTTCTAATGACTATGCAGATGGGAAAACATTAAACGGAGTGGGATTAACCGTTGATAAATCTCCACCCGATGTTACTCATTCCATTAATCTTACTGAGTGTGCCATTGATGAAACTCCTGGACCTGTTCCACCTGAAGCTTTTGCTTCAAACTCTCTGAGAGTGCGCATGCCCACTGAAACTCCCATTCTTGATGAAAGATCATTGCTGGCTTGCATTGTTCGAACAATTCCAGCAGGTGGTAAAATTCAGATTAGTTCCACGCTACCTAATAGACTGGTCAAGATGCTTGCACCTTTGCACTGGCATGATTATCAAAAAAAGCACGGAAAGCTTGATGACTTTGTTGCCAGTCATCCTGAATTATTCATGATCGAGGGTGATTTTATCCAACTTCGGGAAGGGGCGCAAGAAATTATAGCAGCTACAGCAGCTGTTGCAAAGGTAGCAGCAGCAGCAGCAGCTCCTTCTCCTGACTCATCCTATTTACCTTCAGTGGCGGTGACTCCAATGGCACAAACTTATCGATTGAGAAAGATTCCATCTGTTCATTTTGAAAATGTAAAAAACCAACTGATTTTTAATTATTATCGGGTGTTCAATCCTTCTAATACAGCCGATGATCTTTTGCAGTGCTCAATAGTGCAGAGTGAACAATTAAATGGTGTTTGCTTTGGCACCAGCACGGGTCTCTCAAGCGTCAAGCTCCTCAGCAAATCAGACAATAGGGAATTGAATATTCCAGATAGTAAGGCTGGTCAATTATCTGTCCACATGGGAGTTAGGAATGGGACAGTTTTTGATCGATATAGTGCGAGTAGTAATCAAAACATAGGTTCAACGAATGGGAGACCTGGCAACAATATGACAGGAAAACACCAGGGCAGGTAG 2517 42.27 MEATATERGGSLPTHQPPKKWGSIADHHPVLDPLDEELENLKSGQSDERTIYEVQQGREPFDMDFCSISIDGNLNSDILQQRLHGIARQRDELQQMEIELRAQIIARSEIFNMQNKFDCQIKEHNITMIKLQEQLRGREQTICELERKVEDKDRELHAIKLDNEAAWAKEDLFREQDEELATYRRERDHSEAERSQHVKQIHDFQEHILEKERQIIELKEQHRVSQETIVYKDEQLREAHAWIARVWDMDALHSTTNHSLQAELRERTEQYNQLWVGCQRQFAEMERLHLHSIQQLQLELADIRERSGTFNDGSGSQTSQTNLKDDSQYGKTNGPQLDTNGISIASGNTGALSNESSHDVLSFSSTGNALSQGDQVPSVPPAPSLLGVPTYLTSGQVTAIHPFLMHRPGVPQSIVSHFHSAPISSFQQWQSQLVLPIPENDLQLSQNDQELKRSTAKANYEMSVTGLGLHSDYLNGQNGEIGKHDSAILPSTEGAQVDSIDQRLLIVSQPEQNLQHVSSQFRNALRLDTLEHKTEAQEKNASTSNDYADGKTLNGVGLTVDKSPPDVTHSINLTECAIDETPGPVPPEAFASNSLRVRMPTETPILDERSLLACIVRTIPAGGKIQISSTLPNRLVKMLAPLHWHDYQKKHGKLDDFVASHPELFMIEGDFIQLREGAQEIIAATAAVAKVAAAAAAPSPDSSYLPSVAVTPMAQTYRLRKIPSVHFENVKNQLIFNYYRVFNPSNTADDLLQCSIVQSEQLNGVCFGTSTGLSSVKLLSKSDNRELNIPDSKAGQLSVHMGVRNGTVFDRYSASSNQNIGSTNGRPGNNMTGKHQGR 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 9728208 9735498 + Bma027474.1 Bma08g00399 87226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00399 838 PANTHER OS08G0543600 PROTEIN 15 837 - -
Bma08g00399 838 MobiDBLite consensus disorder prediction 307 381 - -
Bma08g00399 838 MobiDBLite consensus disorder prediction 309 378 - -
Bma08g00399 838 MobiDBLite consensus disorder prediction 814 838 - -
Bma08g00399 838 Coils Coil 86 106 - -
Bma08g00399 838 Coils Coil 201 221 - -
Bma08g00399 838 MobiDBLite consensus disorder prediction 1 28 - -
Bma08g00399 838 PANTHER OS08G0543600 PROTEIN 15 837 - -
Bma08g00399 838 Coils Coil 173 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00399 - - - pavi:110749589 916.761
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00399 Bma12g01223 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma12g01223 Bma-Chr12:45105706 Bma08g00399 Bma-Chr8:9728208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g978 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag1015 Cone5ag0722 . . . . . . . . . . . . Bma08g00399 . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi16g982 Blo06g01050 Blo15g00076 . . . Bpe07g01028 . . . . Cma02g01147 Cma15g01000 Car02g00948 Car15g00935 . Cpe05g00579 . . . . . . . . Cla01g00014 . . Cco01g0015 Clacu01g0015 Cmu01g0015 . Cone1ag1013 Cone5ag0720 . . . Csa05g00002 Chy09g01478 . . . Bda06g00796 Bda15g00797 . . Bma08g00399 Bma12g01223 . Cmo02g01178 Cmo15g01064 . . . . . Cpe13g00335 Bhi12g00691 . . . Hepe06g0825 . . . . . . . . . . . . Cme09g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004264 2 4 2 2 2 0 2 1 0 1 1 1 1 1 1 2 1 2 2 0 1 1 1 1 1 0 1 5 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00399 Bma_Chr08 FPKM 3.015346 2.769438 8.117034 7.60533 39.743458 38.388077 40.089039 11.972571 12.83666 13.090255