Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00417 ATGCGAGCTCTCTTGTTTTTCTCCTTCGTCTTCTTCGTTTCTCATTTCCATGGACACCCATTTGCTTCAGCTTCTTCTCTTTCTTCGGAAGAATCTCCAGAGGTGAAAGCACTGCTCCAATGGAAATCAAGCCTCCGTAACCAAACTCAAGCTTTCCTTCCTTCTTGGAAGCTTTCCGACCACCCAAACTCGGGAGCTACAACTCCCTGCAACTGGGTTGGAATCGAATGCAATAGCGGAGGAAATGTTAGTCATATCAACCTTACAGGCTTTGGTTTAATCGGTACACTTGAAGACTTCAACTTCTCTTCTCTTCCTCGTTTATCTTCTCTTGATCTTCACGATAATTACTTGTTTGGTGAGATTCCTCCTTCTCTCAGCATCCTTTCTGAGTTGATTTCTCTCAATCTAAGCTTCAACCATTTCACTGGAAAAATTCCTCCAGAACTTGGAAGCTTGAGCAAGCTCAAGGTCTTAAGCTTCTCCTACAATTCTCTCACTGGTTCTATTCCTTCAACTGTTGGAAACTTGACAAATCTTTCTCTTCTACACTTCGCAAGCAATCATCTTTCGGGTCCGATCCCGTCCGAGATGGGGAGATTGAAATCTCTTGTCGAGCTTCGTTTAAACTTCAACAATCTGACGGGTTCAATTCCTGGTTCTTTGGGTGATTTATCTACCCTCAAAGTGCTGTCACTTTACGGGAACGAGTTGTCTGGTTCATTGCCCAAAGAGATCAACAATCTCACCAATTTAACACACTTTTTCCTCTCAAATAACACTATCACCGGCTTGTTACCTGAAAATCTCTGCCATGGCAATGTGCTTGAATGCTTCTGTGCAAGCAACAATCGTTTTTTTGGCCCTGTTCCAAAGGGTCTTAAAAATTGCACCAGCTTGACAAGGCTTAGGCTTGATAGGAACAGTTTTTATGGGGATGTATCAGAAGACTTTGGTATTTACCCAAAACTTGATTACATTGATTTGAGTTATAATCGTTTCTATGGTCAAGTGACTTCAAATTGGGGTCAGTGTCAGCTCTTAACAAGCTTGAAGCTTTCCAACAATCAGATTTCTGGGGAGATTCCATGGGAGCTTGGAGAATCAACCCTTTTACATGTTCTTGATTTGTCTTCTAATTCTCTTGTGGGTCAAATTCCAAAGGAGTTAGTAAAGTTGAGGTCATTGTTCAACCTCACCCTGAGTTTCAACAATCTTTCCGGGGAAATTCCGTCTGGAATTGGGACACTTTCCGATCTGTCGTATCTCGATCTATCGGCAAACAATTTGAACGGCAATATTCCGAGAGAAATCGGTGATTGTTCAAAGATGTTGTACTTGAACTTGGGCAAAAACAAGCTTCAAGGAGGCGTACCAGAGGAAATAGGAAAGTTGGCGTCACTTCAAGTAATTTTGGATCTCAGTCAAAACTCGCTTTCTGGGAAAATTCCGTCCAATCTTGGGAATTTGGTGAAGCTGGAAATTTTGAATCTCTCCCGCAATGATCTTTCCGGATCAATCCCTTCCACTCTGGATTTGATGAACAGCTTGAGAGTAATCGATTTATCCTACAATGAACTGGAAGGTCCAATTCCAGACAACGCCGCCTTCGAACAAGCACCTCTCGAATCATTCGTTGGAAACAAAGATTTATGCGGAAACCATGTCGGATTGAAGAGGTGTCCTCCAATTTCGAACAAAAACAAGCGAAATTTCGACATCATCTTCCTCATTCTCATTCCTTCAGCAGCAGTTTTCATCATAATGTGTCTAGTTTTCACCATCTTCGTCGTGAAGAAACAGAAGGAGAAAACGGAGGAGGCGAGAGATTCAGAACAGGGAAATATATTTGCGATATGGAGTTACGACGGCAAACTGGTGTACCACGATATCAAGGAAGCGACGGAGGGTTTCGACTCCAAGTACTGCATCGGCGTGGGAGGGCATGGCAGCGTTTACAAAGCAAAGCTGTCGAGCGGCCAAATCGTGGCGGTGAAGAAGCTTCATCCACTACAATCAGCCGAGGCGGAGGAGCAAAAGACCTTCAGGAGCGAGATTAGCGTTCTAACCAAAATCCGCCATCGAAACATCGTGAAACTTCACGGTTACTGTTCCCATGCCCGACAATCCTTTCTGGTGTACGAATACTTGGAGAGAGGAAGTCTGGCGAAGATTTTGAGCGACGGGGGAGGATCGACAGAGTTGGATTGGGTCAAGAGAATCGGCGTCGTTAAAGGAATCGCTAATGCTCTGTGTTACATGCATCACGATTGCATCCCTCCGATAATTCACCGAGACGTATCCACCAACAATATATTGTTGGATTCAAACTACGAAGCTCGTATCTCTGATTTTGGCACTGCTAGACTCCTCAAGCTCGATTCCTCCAATTGGACCGCCATGGCTGGCACCTACGGATACATCGCTCCAGAGCTTGCTTACACGATGAGGGTGACAGAAAAATTCGATGTGTATAGTTTTGGGGTGGTGACCCTTGAAATAATGATGGGAACTCATCCAGCCGTGCTAATGTCATCTCTTTCGTCCGGGTCGGACTCGCCTTCAGATCATCCTCGTTCGGCCTTGTTGAAAGATGCTTTAGATAAGCGGCTGCCGGAACCGGAAGAGGAGGTGGCAAACCAAGTAATTATGATCACCAGATTGGCATTTGCATGCATTAATGTCAACCCTCAAATCAGGCCGAGTATGCATTACATCTCTCAACAGCTATCAACTTGTCGGAGTTCTACATCTGCCCGTTTTTCTGATGTCACCATCGGCGAGCTTTCAAACTTCTCTGACAAAAATACTTGCTAA 2817 44.41 MRALLFFSFVFFVSHFHGHPFASASSLSSEESPEVKALLQWKSSLRNQTQAFLPSWKLSDHPNSGATTPCNWVGIECNSGGNVSHINLTGFGLIGTLEDFNFSSLPRLSSLDLHDNYLFGEIPPSLSILSELISLNLSFNHFTGKIPPELGSLSKLKVLSFSYNSLTGSIPSTVGNLTNLSLLHFASNHLSGPIPSEMGRLKSLVELRLNFNNLTGSIPGSLGDLSTLKVLSLYGNELSGSLPKEINNLTNLTHFFLSNNTITGLLPENLCHGNVLECFCASNNRFFGPVPKGLKNCTSLTRLRLDRNSFYGDVSEDFGIYPKLDYIDLSYNRFYGQVTSNWGQCQLLTSLKLSNNQISGEIPWELGESTLLHVLDLSSNSLVGQIPKELVKLRSLFNLTLSFNNLSGEIPSGIGTLSDLSYLDLSANNLNGNIPREIGDCSKMLYLNLGKNKLQGGVPEEIGKLASLQVILDLSQNSLSGKIPSNLGNLVKLEILNLSRNDLSGSIPSTLDLMNSLRVIDLSYNELEGPIPDNAAFEQAPLESFVGNKDLCGNHVGLKRCPPISNKNKRNFDIIFLILIPSAAVFIIMCLVFTIFVVKKQKEKTEEARDSEQGNIFAIWSYDGKLVYHDIKEATEGFDSKYCIGVGGHGSVYKAKLSSGQIVAVKKLHPLQSAEAEEQKTFRSEISVLTKIRHRNIVKLHGYCSHARQSFLVYEYLERGSLAKILSDGGGSTELDWVKRIGVVKGIANALCYMHHDCIPPIIHRDVSTNNILLDSNYEARISDFGTARLLKLDSSNWTAMAGTYGYIAPELAYTMRVTEKFDVYSFGVVTLEIMMGTHPAVLMSSLSSGSDSPSDHPRSALLKDALDKRLPEPEEEVANQVIMITRLAFACINVNPQIRPSMHYISQQLSTCRSSTSARFSDVTIGELSNFSDKNTC 938
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13625382 13628356 - Bma027516.1 Bma08g00417 87244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00417 938 Gene3D Transferase(Phosphotransferase) domain 1 717 929 - -
Bma08g00417 938 ProSiteProfiles Leucine-rich repeat profile. 492 514 IPR001611 GO:0005515
Bma08g00417 938 ProSitePatterns Tyrosine protein kinases specific active-site signature. 762 774 IPR008266 GO:0004672|GO:0006468
Bma08g00417 938 Gene3D Phosphorylase Kinase; domain 1 597 716 - -
Bma08g00417 938 Pfam Leucine rich repeat N-terminal domain 33 78 IPR013210 -
Bma08g00417 938 Gene3D Ribonuclease Inhibitor 275 570 IPR032675 -
Bma08g00417 938 SUPERFAMILY L domain-like 293 538 - -
Bma08g00417 938 ProSiteProfiles Protein kinase domain profile. 638 912 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00417 938 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE ISOFORM X1 2 933 - -
Bma08g00417 938 SUPERFAMILY L domain-like 51 336 - -
Bma08g00417 938 ProSitePatterns Protein kinases ATP-binding region signature. 644 667 IPR017441 GO:0005524
Bma08g00417 938 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Bma08g00417 938 Gene3D Ribonuclease Inhibitor 31 195 IPR032675 -
Bma08g00417 938 Pfam Protein kinase domain 642 908 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00417 938 SUPERFAMILY Protein kinase-like (PK-like) 619 910 IPR011009 -
Bma08g00417 938 SMART LRR_typ_2 105 129 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 201 224 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 393 415 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 153 177 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 417 441 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 490 513 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 225 248 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 514 539 IPR003591 -
Bma08g00417 938 SMART LRR_typ_2 249 273 IPR003591 -
Bma08g00417 938 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 2 933 - -
Bma08g00417 938 Gene3D Ribonuclease Inhibitor 196 274 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00780 Bma-Chr5:44743705 Bma08g00417 Bma-Chr8:13625382 2.52E-16 dispersed
Bma08g00417 Bma-Chr8:13625382 Bma09g00484 Bma-Chr9:40215688 4.32E-06 dispersed
Bma08g00417 Bma-Chr8:13625382 Bma04g01039 Bma-Chr4:18724369 1.38E-07 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66660 PF00069 Pkinase 9.80E-46 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00417 - - jre:109007672 1162.52