Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00419 GATATTCAACAATTGTTATTGGAAGCAAAACATCGATGGTTACGGCCTGCTGAAATTTGTGAAATTCTCCGTAATTATCAGATGTTTCGTATTGAATCAGAGCCTCCACACAGACCGCCAAGTGGTTCACTTTTTCTTTTCGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGATAGATGGCAAGACTGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTAAACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTTCAACGACGCAGCTATTGGATGCTTGAAGAGTATCTTGAGCATTTGTCGCTTGCCCCAATAGCTTATTTGATTTTGTATCCACCTTTACTGTTCATGAATTTGGAATTTATTTGTACTATCTTGCTTTCTTACCAATCAAAAAAAAGAAAACAAGAAGAAAACTTGCTTGTTATTTCATCACATTATATAGTTATAATCTCGAATCTTGGTTTCTATTTGCAGATTCCTGTTGTAGACAATTCATTACCCTTTCCAAAAGAGCATGTGGACCAATTATCAGACCATGAAACTGTTTATGATCTTGAGGCAGGTGTGTCTGGGCACAGAAATCATGATGAAGTCTTTGAAAATTCTCAGAAGTTACATCTTTCTCATCTTGAAATGTTAAATGAACAACATATGTCGAGCAATCTTCAGTACCAACTAGCAAATGGAGATTCTCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTAGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCACTCTTGGGAGGAGAAGAAGCTTTGAAAAAAGTTGACAGTTTTTCTCGCTGGATATATAGAGAATTAGGGGATGTTGATGATTTGCGTATGCATCCGTCCCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTCATGATGATTCCTCCTTGAGCCCCTCGCTCTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACAGACATGGAAACTGAGGTTCTAATTGTTGGACGATTTCTGGGGATTCACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAATGGTTTTGGCTGATGGAATTCTTTGTTGCCATGCTCCGCCCTATAGTACAGGACAAGTGCCTTTTTATGTAACATTTTCAAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATCTGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGGTGGTACAAATGAATTACGTCTGCAGTTGCAACTTGACAGCTTATTATCTCTGAATTATCTTGGATCTCCTAGCAATATCTTTATAGATGATTTGGACAAACGAAATGTAATTCGTAAACTTATTGCACTCAAGGAGGAAAAAGATTATATTGTTGAGCCAAATTCTCAGGAAGAACTGATCCAGCAGGAGAAAAAGAAATATTTCTTTAAAATCTTGAGGAAAGAAATGTTGTACTCATGGCTCCTTCATAAAGTTGTTGAAGATGGGAAAGGACCTAATGTGTGGGATGAAAACGGGCTAGGGGTAATTCATTTGGCTGCCGCTCTTGGTTATGATTGGGCCATGGAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGATGTCAATGGATGGACTGCACTTCACTGGGCAGCTTACTATGGCAGAGAGCAGACGATTGCAGTTCTTATCACTTTGGGCAGTGGCGCTGGTCTCGTGACAGATCCATCTCCTGAATATCCTTTGGGAAGAACACCTGCAGACCTCGCATCTGCCAACGGTCAAAAAGGGATCTCTGGATTTTTGGCGGAATCTTCATTGAATAGCCAACTCTCAACTTTAACAATGAATGATACCAAGCAAGACAGTGAAGAAGTTTCATCCACCAAAGTTGTGCATGGTGTTTCTGAAAGAATTGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTTTCTCTAAAGGATTCAATCACAGCTGTTAGTCATGCAACACAAGTAGCTGATCGAATACATCAGGTGTTCAGGATGCAGTCGTTTCAGAGGAAACAGTTTGCAGAACACGACGGTGATCAGTTTGAACTTTTAGATGATCGTACAATTTCAATTGTTGCTGCCAGAGCACTAAAGGGCGGACAAGGCAATGGGCTTGCACATTCTGCTGCAATTCACATACAGAAAAAGTATCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGTCAAAGAATTGTTATAATACAGGCCCATGTAAGGGGACACCAGGTTCGGAAGAAATACCCATCAATGACCTGGTCAATCGGAATTGTAGATACTTTATTGCGTTGGAGACGTAAAGGAAGCGGTCTACGGCCGATGGTGGTTCCTAAAGAACCTACCTCTGAAAGCATCCCAGAAGAGGATGACAATGATTTTTTGAAGAAAGGAAGGAGACAAACTGAGGAGAGGTTGCAAAAGGCACTAACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAACTTTAGTACATGGGATTCGTGACAACAAGGTATTTATGCTTTTGCATATATTGTTGCTTACATGTTTCATATTTCTTTAA 2685 40.22 DIQQLLLEAKHRWLRPAEICEILRNYQMFRIESEPPHRPPSGSLFLFDRKVLRYFRKDGHNWRKKIDGKTVKEAHEKLKVGSIDVLNCYYAHGEENENFQRRSYWMLEEYLEHLSLAPIAYLILYPPLLFMNLEFICTILLSYQSKKRKQEENLLVISSHYIVIISNLGFYLQIPVVDNSLPFPKEHVDQLSDHETVYDLEAGVSGHRNHDEVFENSQKLHLSHLEMLNEQHMSSNLQYQLANGDSQCLMKLNSEKDLILDGNVHYASTLRQSLLGGEEALKKVDSFSRWIYRELGDVDDLRMHPSPGISWSADECGNIHDDSSLSPSLSQDQLFSITDYSPKWSFTDMETEVLIVGRFLGIHQDVAKCNWSCMFGEVEVPAMVLADGILCCHAPPYSTGQVPFYVTFSNRLACSEVREFQYLAGSVKDVDVTDIYDGGTNELRLQLQLDSLLSLNYLGSPSNIFIDDLDKRNVIRKLIALKEEKDYIVEPNSQEELIQQEKKKYFFKILRKEMLYSWLLHKVVEDGKGPNVWDENGLGVIHLAAALGYDWAMEPIVSAGVSINFRDVNGWTALHWAAYYGREQTIAVLITLGSGAGLVTDPSPEYPLGRTPADLASANGQKGISGFLAESSLNSQLSTLTMNDTKQDSEEVSSTKVVHGVSERIATPANDGYLPGELSLKDSITAVSHATQVADRIHQVFRMQSFQRKQFAEHDGDQFELLDDRTISIVAARALKGGQGNGLAHSAAIHIQKKYRGWKKRKEFLLIRQRIVIIQAHVRGHQVRKKYPSMTWSIGIVDTLLRWRRKGSGLRPMVVPKEPTSESIPEEDDNDFLKKGRRQTEERLQKALTRVKSMAQDPQGRDQYRRLLTLVHGIRDNKVFMLLHILLLTCFIFL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13769590 13778293 + Bma027518.1 Bma08g00419 87246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00419 894 ProSiteProfiles CG-1 DNA-binding domain profile. 2 128 IPR005559 GO:0003677
Bma08g00419 894 SMART CG_1_2 5 118 IPR005559 GO:0003677
Bma08g00419 894 Pfam CG-1 domain 8 115 IPR005559 GO:0003677
Bma08g00419 894 ProSiteProfiles IQ motif profile. 767 791 IPR000048 GO:0005515
Bma08g00419 894 Gene3D - 494 640 IPR036770 -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 114 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 172 880 - -
Bma08g00419 894 Pfam IQ calmodulin-binding motif 745 764 IPR000048 GO:0005515
Bma08g00419 894 Pfam IQ calmodulin-binding motif 769 787 IPR000048 GO:0005515
Bma08g00419 894 SUPERFAMILY Ankyrin repeat 518 630 IPR036770 -
Bma08g00419 894 Gene3D - 744 791 - -
Bma08g00419 894 Gene3D Immunoglobulins 330 426 IPR013783 -
Bma08g00419 894 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Bma08g00419 894 ProSiteProfiles Ankyrin repeat region circular profile. 569 594 - -
Bma08g00419 894 SUPERFAMILY E set domains 337 422 IPR014756 -
Bma08g00419 894 Pfam Ankyrin repeats (3 copies) 541 631 IPR002110 GO:0005515
Bma08g00419 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 793 IPR027417 -
Bma08g00419 894 ProSiteProfiles IQ motif profile. 744 771 IPR000048 GO:0005515
Bma08g00419 894 Pfam IPT/TIG domain 336 421 IPR002909 -
Bma08g00419 894 CDD IPT 336 423 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 114 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 172 880 - -
Bma08g00419 894 Coils Coil 837 857 - -
Bma08g00419 894 SMART iq_5 743 765 IPR000048 GO:0005515
Bma08g00419 894 SMART iq_5 766 788 IPR000048 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00419 K21596 CAMTA; calmodulin-binding transcription activator - oeu:111409755 827.78
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01136 Bma-Chr4:28303415 Bma08g00419 Bma-Chr8:13769590 6.06E-30 dispersed
Bma05g01017 Bma-Chr5:48659681 Bma08g00419 Bma-Chr8:13769590 1.87E-35 dispersed
Bma05g01137 Bma-Chr5:50414608 Bma08g00419 Bma-Chr8:13769590 3.35E-14 dispersed
Bma08g00419 Bma-Chr8:13769590 Bma13g00036 Bma-Chr13:438643 3.08E-07 dispersed
Bma08g00419 Bma-Chr8:13769590 Bma04g00850 Bma-Chr4:10747548 1.19E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma08g00419 . 278 877 CAMTA Transcription Factor Family AT5G09410 58.0 3.4e-172 602.4
Bma05g01017 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 54.1 1.7e-198 689.9
Bma04g01136 BCT 1 631 CAMTA Transcription Factor Family AT4G16150 52.6 2.4e-189 659.4
Bma04g01136 BCT 1 906 CAMTA Transcription Factor Family AT3G16940 51.9 3.3e-254 874.8
Bma05g01017 BCT 28 915 CAMTA Transcription Factor Family AT3G16940 52.0 8.4e-250 860.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006263 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 2 0 4 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57741 PF03859 CG-1 1.10E-44 No_clan Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00419 Bma_Chr08 FPKM 3.956589 6.091331 5.842318 5.801861 7.913306 7.675373 8.133522 32.814053 31.627956 32.939541