Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00419 GATATTCAACAATTGTTATTGGAAGCAAAACATCGATGGTTACGGCCTGCTGAAATTTGTGAAATTCTCCGTAATTATCAGATGTTTCGTATTGAATCAGAGCCTCCACACAGACCGCCAAGTGGTTCACTTTTTCTTTTCGATCGAAAGGTTTTGAGATACTTTAGAAAGGATGGGCATAATTGGAGGAAGAAGATAGATGGCAAGACTGTGAAGGAAGCTCACGAGAAGCTGAAGGTTGGAAGCATTGATGTATTAAACTGTTATTATGCCCATGGAGAAGAAAATGAAAACTTTCAACGACGCAGCTATTGGATGCTTGAAGAGTATCTTGAGCATTTGTCGCTTGCCCCAATAGCTTATTTGATTTTGTATCCACCTTTACTGTTCATGAATTTGGAATTTATTTGTACTATCTTGCTTTCTTACCAATCAAAAAAAAGAAAACAAGAAGAAAACTTGCTTGTTATTTCATCACATTATATAGTTATAATCTCGAATCTTGGTTTCTATTTGCAGATTCCTGTTGTAGACAATTCATTACCCTTTCCAAAAGAGCATGTGGACCAATTATCAGACCATGAAACTGTTTATGATCTTGAGGCAGGTGTGTCTGGGCACAGAAATCATGATGAAGTCTTTGAAAATTCTCAGAAGTTACATCTTTCTCATCTTGAAATGTTAAATGAACAACATATGTCGAGCAATCTTCAGTACCAACTAGCAAATGGAGATTCTCAGTGCTTGATGAAATTGAATTCTGAGAAAGACTTGATCCTAGATGGAAATGTTCACTATGCTTCAACTTTGCGACAATCACTCTTGGGAGGAGAAGAAGCTTTGAAAAAAGTTGACAGTTTTTCTCGCTGGATATATAGAGAATTAGGGGATGTTGATGATTTGCGTATGCATCCGTCCCCAGGAATTTCATGGAGTGCTGATGAATGTGGAAATATTCATGATGATTCCTCCTTGAGCCCCTCGCTCTCTCAAGACCAGCTTTTCAGCATAACTGACTATTCTCCAAAGTGGTCATTCACAGACATGGAAACTGAGGTTCTAATTGTTGGACGATTTCTGGGGATTCACCAAGATGTTGCCAAATGTAATTGGTCATGTATGTTTGGGGAAGTAGAGGTTCCTGCAATGGTTTTGGCTGATGGAATTCTTTGTTGCCATGCTCCGCCCTATAGTACAGGACAAGTGCCTTTTTATGTAACATTTTCAAACAGATTAGCTTGCAGTGAAGTGCGAGAATTTCAGTATCTGGCTGGCTCTGTCAAGGATGTGGATGTCACAGATATCTATGATGGTGGTACAAATGAATTACGTCTGCAGTTGCAACTTGACAGCTTATTATCTCTGAATTATCTTGGATCTCCTAGCAATATCTTTATAGATGATTTGGACAAACGAAATGTAATTCGTAAACTTATTGCACTCAAGGAGGAAAAAGATTATATTGTTGAGCCAAATTCTCAGGAAGAACTGATCCAGCAGGAGAAAAAGAAATATTTCTTTAAAATCTTGAGGAAAGAAATGTTGTACTCATGGCTCCTTCATAAAGTTGTTGAAGATGGGAAAGGACCTAATGTGTGGGATGAAAACGGGCTAGGGGTAATTCATTTGGCTGCCGCTCTTGGTTATGATTGGGCCATGGAACCAATTGTGAGTGCAGGAGTTAGTATAAATTTCCGTGATGTCAATGGATGGACTGCACTTCACTGGGCAGCTTACTATGGCAGAGAGCAGACGATTGCAGTTCTTATCACTTTGGGCAGTGGCGCTGGTCTCGTGACAGATCCATCTCCTGAATATCCTTTGGGAAGAACACCTGCAGACCTCGCATCTGCCAACGGTCAAAAAGGGATCTCTGGATTTTTGGCGGAATCTTCATTGAATAGCCAACTCTCAACTTTAACAATGAATGATACCAAGCAAGACAGTGAAGAAGTTTCATCCACCAAAGTTGTGCATGGTGTTTCTGAAAGAATTGCAACTCCTGCCAATGATGGTTATTTGCCTGGTGAACTTTCTCTAAAGGATTCAATCACAGCTGTTAGTCATGCAACACAAGTAGCTGATCGAATACATCAGGTGTTCAGGATGCAGTCGTTTCAGAGGAAACAGTTTGCAGAACACGACGGTGATCAGTTTGAACTTTTAGATGATCGTACAATTTCAATTGTTGCTGCCAGAGCACTAAAGGGCGGACAAGGCAATGGGCTTGCACATTCTGCTGCAATTCACATACAGAAAAAGTATCGTGGTTGGAAAAAAAGAAAAGAGTTCTTGTTGATTCGTCAAAGAATTGTTATAATACAGGCCCATGTAAGGGGACACCAGGTTCGGAAGAAATACCCATCAATGACCTGGTCAATCGGAATTGTAGATACTTTATTGCGTTGGAGACGTAAAGGAAGCGGTCTACGGCCGATGGTGGTTCCTAAAGAACCTACCTCTGAAAGCATCCCAGAAGAGGATGACAATGATTTTTTGAAGAAAGGAAGGAGACAAACTGAGGAGAGGTTGCAAAAGGCACTAACTAGAGTTAAGTCTATGGCTCAGGATCCTCAGGGACGAGATCAGTACCGTAGGCTGCTAACTTTAGTACATGGGATTCGTGACAACAAGGTATTTATGCTTTTGCATATATTGTTGCTTACATGTTTCATATTTCTTTAA 2685 40.22 DIQQLLLEAKHRWLRPAEICEILRNYQMFRIESEPPHRPPSGSLFLFDRKVLRYFRKDGHNWRKKIDGKTVKEAHEKLKVGSIDVLNCYYAHGEENENFQRRSYWMLEEYLEHLSLAPIAYLILYPPLLFMNLEFICTILLSYQSKKRKQEENLLVISSHYIVIISNLGFYLQIPVVDNSLPFPKEHVDQLSDHETVYDLEAGVSGHRNHDEVFENSQKLHLSHLEMLNEQHMSSNLQYQLANGDSQCLMKLNSEKDLILDGNVHYASTLRQSLLGGEEALKKVDSFSRWIYRELGDVDDLRMHPSPGISWSADECGNIHDDSSLSPSLSQDQLFSITDYSPKWSFTDMETEVLIVGRFLGIHQDVAKCNWSCMFGEVEVPAMVLADGILCCHAPPYSTGQVPFYVTFSNRLACSEVREFQYLAGSVKDVDVTDIYDGGTNELRLQLQLDSLLSLNYLGSPSNIFIDDLDKRNVIRKLIALKEEKDYIVEPNSQEELIQQEKKKYFFKILRKEMLYSWLLHKVVEDGKGPNVWDENGLGVIHLAAALGYDWAMEPIVSAGVSINFRDVNGWTALHWAAYYGREQTIAVLITLGSGAGLVTDPSPEYPLGRTPADLASANGQKGISGFLAESSLNSQLSTLTMNDTKQDSEEVSSTKVVHGVSERIATPANDGYLPGELSLKDSITAVSHATQVADRIHQVFRMQSFQRKQFAEHDGDQFELLDDRTISIVAARALKGGQGNGLAHSAAIHIQKKYRGWKKRKEFLLIRQRIVIIQAHVRGHQVRKKYPSMTWSIGIVDTLLRWRRKGSGLRPMVVPKEPTSESIPEEDDNDFLKKGRRQTEERLQKALTRVKSMAQDPQGRDQYRRLLTLVHGIRDNKVFMLLHILLLTCFIFL 894
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 13769590 13778293 + Bma027518.1 Bma08g00419 87246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00419 894 ProSiteProfiles CG-1 DNA-binding domain profile. 2 128 IPR005559 GO:0003677
Bma08g00419 894 SMART CG_1_2 5 118 IPR005559 GO:0003677
Bma08g00419 894 Pfam CG-1 domain 8 115 IPR005559 GO:0003677
Bma08g00419 894 ProSiteProfiles IQ motif profile. 767 791 IPR000048 GO:0005515
Bma08g00419 894 Gene3D - 494 640 IPR036770 -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 1 114 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 1 172 880 - -
Bma08g00419 894 Pfam IQ calmodulin-binding motif 745 764 IPR000048 GO:0005515
Bma08g00419 894 Pfam IQ calmodulin-binding motif 769 787 IPR000048 GO:0005515
Bma08g00419 894 SUPERFAMILY Ankyrin repeat 518 630 IPR036770 -
Bma08g00419 894 Gene3D - 744 791 - -
Bma08g00419 894 Gene3D Immunoglobulins 330 426 IPR013783 -
Bma08g00419 894 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Bma08g00419 894 ProSiteProfiles Ankyrin repeat region circular profile. 569 594 - -
Bma08g00419 894 SUPERFAMILY E set domains 337 422 IPR014756 -
Bma08g00419 894 Pfam Ankyrin repeats (3 copies) 541 631 IPR002110 GO:0005515
Bma08g00419 894 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 793 IPR027417 -
Bma08g00419 894 ProSiteProfiles IQ motif profile. 744 771 IPR000048 GO:0005515
Bma08g00419 894 Pfam IPT/TIG domain 336 421 IPR002909 -
Bma08g00419 894 CDD IPT 336 423 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 1 114 - -
Bma08g00419 894 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 172 880 - -
Bma08g00419 894 Coils Coil 837 857 - -
Bma08g00419 894 SMART iq_5 743 765 IPR000048 GO:0005515
Bma08g00419 894 SMART iq_5 766 788 IPR000048 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01136 Bma-Chr4:28303415 Bma08g00419 Bma-Chr8:13769590 6.06E-30 dispersed
Bma05g01017 Bma-Chr5:48659681 Bma08g00419 Bma-Chr8:13769590 1.87E-35 dispersed
Bma05g01137 Bma-Chr5:50414608 Bma08g00419 Bma-Chr8:13769590 3.35E-14 dispersed
Bma08g00419 Bma-Chr8:13769590 Bma13g00036 Bma-Chr13:438643 3.08E-07 dispersed
Bma08g00419 Bma-Chr8:13769590 Bma04g00850 Bma-Chr4:10747548 1.19E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57741 PF03859 CG-1 1.10E-44 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00419 K21596 - oeu:111409755 827.78