Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00475 ATGGCAGAAACGAAAGCAGAATCAGAAGAAGAGAGCCTGCAGGAGCTCACCGACGGGCTCCAAGGCTTGCAAAACGCGATGTCCGATTTAAGCACTCAGGTGGCCACCACCGGCCAAGCTCTTCAAGATCTGCGAAGTTCACAGGATCGCTTTGGGCAACAGTTGACAGCACAGCTGGACGAGCTTTTATCCATGGTTACGAAATTGGCTCAGTCTCAGATGTTCACTGCCGCGGAAATGGCGCCGATTCTCCAGCAATCGGCCGAATCTGGGCAGAAGCAACAGCAAGCAAGGGGAGATTCATCGCTGCCTTCTTCCAGCGCACCAGTCGCAGCGGCTGAATCGGGGCTGAGGGCAGCCATATTCGGAGAGCACGGTCAGAAACAGCCATTACACAGTGCTCCATTCCTACCATTTTACTCCAATACGCCGATTCCACCACCTCAGCGACAACATCTTCCTTCCAAATCGGCGGTGCCAAAGGTTGACGACATTAACCAAGCTCTTGCGGGTGCTGGCGCGAACCAGACGATGTCTAAAGCCATATCGACCCACTATGGAGTAGCCTCCCTTAAAATCCTCGGATTGGTTTCTCCGATTGCCTCAGCAATGGCGACTGACGGGTTTCATCTTCCTGACGCGGACGAAGACTTCGACTCTCTAGTATCCGAGCAACGTTGCGAGCTTATGGCTGCTCAAACTCTAGAATCTGATCTCGATTTCGCCTTCGACATTCAACTCCAGGGGGCTCTTGCTGTTTCTCGGGCTTCTCAACCTTCATATTCCTCTGCTAAGGACGAAATGGCGCAGGGAATGCAAAATCACAAGCTGGGTTTAGCAAATCTTATGGTGAGTTCATACGTTTTAATTTTTAAGATTCTGAACTACAAATCGACAAGAAAAAAATTATATTACAAGCCTCCATTGTGTATTTTCCTGGATGGAAGTGAAATTCCAAAGACTTTACATAGAGGTATTACAAATGCATCTAGGGAAGAAGAAGGTAAGGGTGAGGAATGCAGTAATAGTCCAGTGGGAGAGAGTTCTGGTTTGTCTCATATATGTTCTGCTGGATTGAGTGAAGACAAGGCTACTTTGAGAGATGAACATATTGCTTCTGGAGTAGTTACAGAGAATTTGAATGCTGAAGATGTCAAAGCAGTCATGTTGGCTGACTCTGCTCAAATAAGTGGGGATACCATACACCATGGGAAGGATAATGTGAGTGGTCTAGATGTTTCAGTTGGTGAAAAGACGTTGAGTGAAAAATCTAATCATTCTGTGCCTCAGAAAGAGAAAAGTGACATGGAAGTTGAATGTGAATCCGAAGCAGCAGCTTCTAATGAAGTTAGCAAGAACTGCACGAAGGAGATGGATGTTGTCCTAGTATCCGGCGAGTTGATGGCAATAATTGGTGATGGTGTCGATGTTTTGCCAGTTATGAAACAAGTTTCACCCAACGATCAAATGCTTAGACAATCTACGGCCTCACCATTGCAAGTAATCCAGGAATCTAATGGTAAAAACTGGAAGGATCAAGAGCTCAATGAAACTGTCTCTGCATCCCAAGGAAAGAATGATGGACAAGCTATTAATAGTGATTGTGGAACTGATAATGAGTTCTCTTTTTCTGCTGTTAGTGTGATGAGTACAAATACTGTTGTTGAGGATAGGAATGGTCTCCAATTGAAGGTTGGGCATAAAGTGCTTGCTGATATGCGGATATTGAATTTAATCAGCTCTACTTTCAGGATTGAACAAGGGTCATTGACAGGGGAGAGTGAAGCAGTAAGCAAATATGTTAAGGTTGTGCCAGAAAATACTGATATTCAAGGTAAGAAATGTATGGTTTTTGCTGGGACAACTGTAGTGAATGGGAATGCCATATGCTTAGTTACCCAGATAGGGATGAATACTGAAATAGGAAAGGTGCATTCACAGATTCAAGAAGCATCACTAAGTGAAGAAGATACTCCATTAAAGAAAAAGTTGAATGAGTTTGGAGAGCTTTTAAGTATTATCATTGGAGTGATTTGTGCTCTTGTTTGGCTTATCAATGTGACATACTTTCTCACTTGGAAATACGTTGATGGATGGCCGCGTAACTTTAAGTTCTCCTTCGAGAAGTGCACATATTACTTTGAGATTGCTGTAGCATTGGCTGTTGCTGCTATTCCAGAAGGTCTACCCGCAGTTATAACAACATGCATGGCACTTGGCACACGAAAAATGGCTCAAAAGAATACACTTGTTCGAAAGCTGCCTAGTGTTGAAACTCTTGGTTGTACAACTGTCATTTGTTCCGACAAAACAGGTACTTTGACAACCAATCAGATGGCTGTGGCAAAACTTGTGGCTATTGGTTCTAGACCCGGTGCTATTCGGGACTTGGATGTTGAAGGGACAACATATAATCCTTTTGATGGAAAAATACATGGCTGGAAAAATAAAATGGACGCTAATCTTCAAATGATTGCAAAGATTTCTGCTATCTGTAATGATGCTGGTGTTGAACAATCTGGAATTCACTTTGTTGCCAATGGCATGCCCACCGAAGCAGCATTGAAATTTTTGGTGGAAAAAATGCGACTCCCTGAAGGAATTGGTTCTGGCACACATTCTGCTCATGAGGATATACTGCGGTGCTGTCAACAATGGAAAAAAAAAAAAAATTGA 2676 43.68 MAETKAESEEESLQELTDGLQGLQNAMSDLSTQVATTGQALQDLRSSQDRFGQQLTAQLDELLSMVTKLAQSQMFTAAEMAPILQQSAESGQKQQQARGDSSLPSSSAPVAAAESGLRAAIFGEHGQKQPLHSAPFLPFYSNTPIPPPQRQHLPSKSAVPKVDDINQALAGAGANQTMSKAISTHYGVASLKILGLVSPIASAMATDGFHLPDADEDFDSLVSEQRCELMAAQTLESDLDFAFDIQLQGALAVSRASQPSYSSAKDEMAQGMQNHKLGLANLMVSSYVLIFKILNYKSTRKKLYYKPPLCIFLDGSEIPKTLHRGITNASREEEGKGEECSNSPVGESSGLSHICSAGLSEDKATLRDEHIASGVVTENLNAEDVKAVMLADSAQISGDTIHHGKDNVSGLDVSVGEKTLSEKSNHSVPQKEKSDMEVECESEAAASNEVSKNCTKEMDVVLVSGELMAIIGDGVDVLPVMKQVSPNDQMLRQSTASPLQVIQESNGKNWKDQELNETVSASQGKNDGQAINSDCGTDNEFSFSAVSVMSTNTVVEDRNGLQLKVGHKVLADMRILNLISSTFRIEQGSLTGESEAVSKYVKVVPENTDIQGKKCMVFAGTTVVNGNAICLVTQIGMNTEIGKVHSQIQEASLSEEDTPLKKKLNEFGELLSIIIGVICALVWLINVTYFLTWKYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCMALGTRKMAQKNTLVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLVAIGSRPGAIRDLDVEGTTYNPFDGKIHGWKNKMDANLQMIAKISAICNDAGVEQSGIHFVANGMPTEAALKFLVEKMRLPEGIGSGTHSAHEDILRCCQQWKKKKN 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 22724207 22726882 - Bma027649.1 Bma08g00475 87302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00475 891 ProSitePatterns E1-E2 ATPases phosphorylation site. 769 775 IPR018303 -
Bma08g00475 891 Gene3D - 764 776 IPR023214 -
Bma08g00475 891 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 774 866 IPR023299 GO:0000166
Bma08g00475 891 SUPERFAMILY Calcium ATPase, transduction domain A 561 646 IPR008250 -
Bma08g00475 891 MobiDBLite consensus disorder prediction 1 25 - -
Bma08g00475 891 PRINTS P-type cation-transporting ATPase superfamily signature 767 781 - -
Bma08g00475 891 PRINTS P-type cation-transporting ATPase superfamily signature 586 600 - -
Bma08g00475 891 SUPERFAMILY Calcium ATPase, transmembrane domain M 651 761 IPR023298 -
Bma08g00475 891 Gene3D - 562 649 - -
Bma08g00475 891 PANTHER CALCIUM-TRANSPORTING ATPASE 561 888 - -
Bma08g00475 891 MobiDBLite consensus disorder prediction 86 109 - -
Bma08g00475 891 MobiDBLite consensus disorder prediction 329 352 - -
Bma08g00475 891 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 706 788 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bma08g00475 891 MobiDBLite consensus disorder prediction 133 158 - -
Bma08g00475 891 Coils Coil 6 33 - -
Bma08g00475 891 MobiDBLite consensus disorder prediction 86 110 - -
Bma08g00475 891 Gene3D - 650 763 - -
Bma08g00475 891 Gene3D - 777 867 IPR023299 GO:0000166
Bma08g00475 891 Pfam E1-E2 ATPase 561 747 - -
Bma08g00475 891 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 561 888 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00753 Bma-Chr5:44007312 Bma08g00475 Bma-Chr8:22724207 2.35E-29 dispersed
Bma08g00475 Bma-Chr8:22724207 Bma11g00140 Bma-Chr11:1239187 3.96E-79 dispersed
Bma08g00475 Bma-Chr8:22724207 Bma07g00120 Bma-Chr7:1932200 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00475 K01537 - pvy:116134658 540.421