Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00506 ATGACGCCTTACCTCTTCCGCATTTTCTTCCTCAGCCTTCTCCGGCTCTCATTTTTTTCTCTACTCTGTCATAATAATGTCGGAGAAGTTGAAGCCCTCACTTTCTCATCTGACATTGCAGCCCTTAAAGCCTTCAAAGCCGCCGTTAAACCCGGTTCCATCCAACCTTGGTCGTGCTTGGCCTCCTGGAACTTCTCTACTGACCCATGTCTCCTCCCTCGCCGCACGTTCTTCGTCTGCGGAATCCTCTGCAACACCGAGTCCACCAGACTAACCCAACTCACCCTCGATCCCGCGGGTTATTCCGGTACCCTTTCTCCATTCGTTTCTCAACTCACTGAGCTGACTGTTATCGACCTCTCTGATAATTACTTCTCCGGTTCGATTCCCTCTTCTATTTCTTCTCTCTCTAACCTCCAGATCCTGACTCTCCGATCCAATGCGTTTTCTGGACCTGTTCCTCCCGCAATTACCAACCTCAAGAACCTTGATTCCTTGGACCTTTCTCACAATTCCCTCTCTGGGAATCTCCCATCTTCTCTGAACTCTCTCTCTAGCTTGAGACGTCTCGATCTGAGCTACAATGGTGTTGGCGGGGCTCTCCCAAAACTCCCGCCCAACTTGGTGGAGCTAGCTCTGAAGAGAAATTCTCTCTCTGGGGCTCTCTCTGAATCGTCGTTCAGTGGGGTGACTCAGCTGGAGGTGGTCGAACTGAGTGAAAACTCGCTAACCGGAACTTTAGAGTCCTGGTTTTTCCTCCTACCTTCGCTTCAACAGGTCGATTTATCCAATAACAGTTTGACACGTGTCACGATCTTAAGGCCTGCATCTAATTTCAGCAGCGACCTCGTGGCCGTCGATTTGGGCTTCAACAAAATCGAAGGCTACGCGCCCGCGAATTTCGCGGCGTATCCTCTCTTGTCGTCTCTCTCGCTACGCCACAACCGACTGCGTGGCGCTATCCCATTGGAGTACAGCCAGAAAAAATCGCTCAGAAGATTGTACCTGGACGGAAATTTCTTAACAGGAAAGCCACCGCCGGCGTTTTTCGCCAAGGAATCGTTCGTCTCCGGCAGTTTGGGAGATAACTGTCTGGATGGATGCCCAGCGTCATCGGCACTGTGTACTCCGTCGCAGAAGCCGAATGCCATGTGCAAGGAAGCCAACGGCGGTGGAAAGCCCAGGTTTTGA 1191 51.47 MTPYLFRIFFLSLLRLSFFSLLCHNNVGEVEALTFSSDIAALKAFKAAVKPGSIQPWSCLASWNFSTDPCLLPRRTFFVCGILCNTESTRLTQLTLDPAGYSGTLSPFVSQLTELTVIDLSDNYFSGSIPSSISSLSNLQILTLRSNAFSGPVPPAITNLKNLDSLDLSHNSLSGNLPSSLNSLSSLRRLDLSYNGVGGALPKLPPNLVELALKRNSLSGALSESSFSGVTQLEVVELSENSLTGTLESWFFLLPSLQQVDLSNNSLTRVTILRPASNFSSDLVAVDLGFNKIEGYAPANFAAYPLLSSLSLRHNRLRGAIPLEYSQKKSLRRLYLDGNFLTGKPPPAFFAKESFVSGSLGDNCLDGCPASSALCTPSQKPNAMCKEANGGGKPRF 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 26484942 26486132 + Bma027715.1 Bma08g00506 87333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00506 396 PRINTS Leucine-rich repeat signature 163 176 - -
Bma08g00506 396 PRINTS Leucine-rich repeat signature 254 267 - -
Bma08g00506 396 PANTHER LEUCINE-RICH REPEAT (LRR) FAMILY PROTEIN 18 394 - -
Bma08g00506 396 Gene3D Ribonuclease Inhibitor 35 204 IPR032675 -
Bma08g00506 396 SMART LRR_typ_2 112 136 IPR003591 -
Bma08g00506 396 SMART LRR_typ_2 254 275 IPR003591 -
Bma08g00506 396 SMART LRR_typ_2 160 183 IPR003591 -
Bma08g00506 396 SMART LRR_typ_2 184 211 IPR003591 -
Bma08g00506 396 ProSiteProfiles Leucine-rich repeat profile. 162 184 IPR001611 GO:0005515
Bma08g00506 396 SUPERFAMILY L domain-like 78 372 - -
Bma08g00506 396 Pfam Leucine Rich Repeat 115 136 IPR001611 GO:0005515
Bma08g00506 396 Pfam Leucine Rich Repeat 330 349 IPR001611 GO:0005515
Bma08g00506 396 Pfam Leucine rich repeat 206 267 IPR001611 GO:0005515
Bma08g00506 396 Pfam Leucine rich repeat 156 195 IPR001611 GO:0005515
Bma08g00506 396 Gene3D Ribonuclease Inhibitor 205 378 IPR032675 -
Bma08g00506 396 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 18 394 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00506 - - - csv:101221363 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00506 Bma-Chr8:26484942 Bma07g01113 Bma-Chr7:44427910 1.66E-07 dispersed
Bma08g00506 Bma-Chr8:26484942 Bma03g00969 Bma-Chr3:10281854 3.98E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g614 . Blo03g00087 . . . Bpe12g00298 . . Cmo19g00600 Cmo11g01389 . . . . . Cpe04g00301 Cpe15g00471 . . . . . . . Cla02g00630 Cam02g0664 Cec02g0668 Cco02g0692 Clacu02g0672 Cmu02g0666 Cre02g0985 . Cone8ag1111 Cone3ag0994 Cone10ag1015 Lsi03g00527 Csa07g00728 . Cme01g00080 . . Bda15g00844 . . . . Bma08g00506 . . . Cma11g01726 . Car11g01115 . . . Bhi11g01177 . . . . . . . . . . . . . . . Chy01g00086 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008155 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00506 Bma_Chr08 FPKM 13.032468 14.110065 6.322054 5.467843 2.283079 2.419941 2.279107 0.457884 0.511064 0.508451