Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00520 ATTATGGACTTGAAACACAACATTCGTAATATGTCTGTCATTGCACATGTTGATCATGGAAAGTCAACCCTTACCGATTCACTTGTTGCTGCTGCTGGTATCATTGCTCAGGAGGTTGCAGGTGATGTTCGGATGACAGATACTCGTGCTGATGAAGCAGAACGCGGTATCACTATTAAATCCACTGGAATTTCATTATACTATGAAATGTCGGATGAGTCTTTGAAGAATTACAAGGGAGAGCGAGTTGGAAATGAGTATCTCATAAATCTCATTGATTCTCCTGGACATGTTGACTTCTCCTCTGAGGTCACTGCTGCTCTCCGTATCACTGATGGTGCACTGGTGGTGGTAGATTGCATTGAAGGAGTTTGCGTCCAGACTGAAACTGTCCTCCGTCAGGCTCTTGGAGAGAGAATTAGGCCTGTTTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAGGTTGATGGAGAAGAAGCTTATCAAACATTCCAAAGGGTCATTGAGAATGCAAATGTCATCATGGCCACATATGAGGATCCTCTTCTTGGTGACGTGCAGGTCTATCCTGAGAAAGGAACGGTGGCGTTCTCTGCTGGTTTACATGGTTGGGCTTTCACGCTGACCAACTTTGCAAAAATGTATGCCTCCAAATTCGGGGTTGATGAGTCGAAGATGATGGAGAGGCTTTGGGGTGAAAATTTCTTTGATCCTGCCACTAAAAAATGGACCAGCAAAAATACAGGTTCTGGAACATGCAAGCGCGGATTTGTTCAGTTCTGTTATGAGCCCATCAAGCAAATTATTGCAACTTGCATGAACGACCAGAAGGATAAGCTTTGGCCTATGTTGAAAAAGTTGGGTGTGACTATGAAGTCGGATGAGAAGGAATTGATGGGCAAGGCGCTGATGAAACGAGTCATGCAAACTTGGCTACCAGCTAGCACAGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCTCCATCAAAGGCCCAGAGGTATCGTGTTGAGAATTTGTATGAGGGCCCTCTTGATGACCAATATGCTACTGCAATTAGAAACTGTGACCCTGAGGGACCACTGATGCTTTATGTGTCAAAGATGATTCCAGCATCTGACAAGGGTCGGTTCTTTGCTTTTGGTCGTGTTTTCTCTGGTAGAGTTGCCACTGGTATGAAAGTGAGGATTATGGGGCCTAACTACGTTCCTGGTGAGAAAAAGGACTTGTACGTTAAAAGTGTTCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACCGTTGAGGATGTTCCTTGCGGGAACACAGTGGCCATGGTTGGGCTCGATCAGTTTATTACCAAAAATGCTACTTTGACAAATGAGAAAGAAGTTGATGCACACCCAATTCGAGCAATGAAATTTTCAGTTTCACCAGTTGTACGAGTGGCTGTTCAGTGCAAGGTGGCATCTGACCTTCCCAAGCTTGTTGAAGGACTAAAACGTTTGGCAAAGTCGGATCCTATGGTTGTTTGTTCAATGGAAGAGTCTGGAGAGCACATCATTGCTGGGGCTGGAGAATTGCACCTTGAAATCTGTTTGAAGGATTTGCAGGACGACTTCATGGGCGGTGCTGAAATTGTGAAATCTGATCCTGTGGTTTCATTCCGTGAGACTGTTCTTGAGAAGTCGTGTCGAACAGTCATGAGTAAGTCACCCAATAAACATAACCGACTGTACATGGAAGCTCGACCTTTGGAAGATGGACTAGCTGAGGCAATTGATGATGGTCGAATTGGCCCAAGAGATGACCCAAAAGTGCGTTCAAAAATTTTGGCGGAGGAATTCGGTTGGGACAAGGATCTTGCCAAAAAGATATGGTGTTTCGGCCCTGAAACAACTGGGCCCAATATGGTTGTGGATATGTGTAAGGGAGTTCAGTATCTCAATGAAATAAAGGACTCCGTCGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCCTTGTGTGAAGAAAACATGAGGGGCATATGTTTTGAAGTTTGCGATGTGGTTCTGCACGCCGATGCAATCCACAGAGGAGGTGGTCAGGTTATCCCTACTGCTAGGAGGGTCATCTATGCTTCTCAAATCACAGCCAAGCCCCGACTTCTGGAGCCAGTCTATTTGGTGGAGATCCAAGCACCTGAGCAGGCACTTGGAGGTATTTATAGCGTTCTTAACCAGAAACGTGGGCATGTGTTTGAAGAAATGCAGAGGCCTGGTACCCCTCTCTATAACATCAAGGCCTACCTCCCTGTGGTTGAGTCCTTTGGTTTTTCGGGCACTCTGCGGGCTGCCACCTCTGGGCAGGCGTTTCCTCAGTGTGTGTTTGATCATTGGGATATGATGTCGTCTGACCCGTTAGAATCTGGATCCCAGGCTGCCAATCTTGTGGTTGAAATTCGAAAGAGGAAGGGGTTGAAGGAGCAGATGACACCACTCTCTGATTTCGAGGACAAGCTTTAA 2499 45.82 IMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKNYKGERVGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSGTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLKKLGVTMKSDEKELMGKALMKRVMQTWLPASTALLEMMIFHLPSPSKAQRYRVENLYEGPLDDQYATAIRNCDPEGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALCEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAANLVVEIRKRKGLKEQMTPLSDFEDKL 832
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 28220963 28223859 + Bma027737.1 Bma08g00520 87347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00520 832 PRINTS GTP-binding elongation factor signature 10 23 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 PRINTS GTP-binding elongation factor signature 106 117 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 PRINTS GTP-binding elongation factor signature 54 62 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 PRINTS GTP-binding elongation factor signature 90 100 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 PRINTS GTP-binding elongation factor signature 142 151 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 SUPERFAMILY Translation proteins 332 465 IPR009000 -
Bma08g00520 832 Pfam Elongation factor Tu domain 2 383 456 IPR004161 GO:0005525
Bma08g00520 832 SUPERFAMILY EF-G C-terminal domain-like 716 825 IPR035647 -
Bma08g00520 832 Gene3D Yeast translation eEF2 (G' domain) 215 315 - -
Bma08g00520 832 SUPERFAMILY EF-G C-terminal domain-like 473 549 IPR035647 -
Bma08g00520 832 Gene3D Translation factors 332 473 - -
Bma08g00520 832 SUPERFAMILY Ribosomal protein S5 domain 2-like 551 715 IPR020568 -
Bma08g00520 832 Gene3D - 3 214 IPR027417 -
Bma08g00520 832 CDD EF2_snRNP_III 476 548 - -
Bma08g00520 832 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 6 333 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 Gene3D - 558 711 IPR014721 -
Bma08g00520 832 Pfam Elongation factor G C-terminus 713 800 IPR000640 -
Bma08g00520 832 Pfam Elongation factor Tu GTP binding domain 6 331 IPR000795 GO:0003924|GO:0005525
Bma08g00520 832 Pfam Elongation Factor G, domain III 476 538 IPR041095 -
Bma08g00520 832 CDD EF2 9 219 - -
Bma08g00520 832 CDD EF2_II 364 459 - -
Bma08g00520 832 Gene3D - 712 832 - -
Bma08g00520 832 Gene3D Elongation Factor G (Translational Gtpase), domain 3 475 552 - -
Bma08g00520 832 CDD aeEF2_snRNP_like_IV 548 720 - -
Bma08g00520 832 CDD eEF2_snRNP_like_C 716 794 - -
Bma08g00520 832 Pfam Elongation factor G, domain IV 599 710 IPR005517 GO:0005525
Bma08g00520 832 SMART EFG_IV_2 595 711 IPR005517 GO:0005525
Bma08g00520 832 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 330 IPR027417 -
Bma08g00520 832 PANTHER - 1 831 - -
Bma08g00520 832 TIGRFAM small_GTP: small GTP-binding protein domain 9 165 IPR005225 GO:0005525
Bma08g00520 832 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 47 62 IPR031157 -
Bma08g00520 832 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 1 831 - -
Bma08g00520 832 SMART EFG_C_a 713 802 IPR000640 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00285 Bma-Chr1:2391105 Bma08g00520 Bma-Chr8:28220963 7.38E-72 dispersed
Bma05g00778 Bma-Chr5:44730231 Bma08g00520 Bma-Chr8:28220963 4.22E-42 dispersed
Bma05g01234 Bma-Chr5:51746302 Bma08g00520 Bma-Chr8:28220963 7.39E-06 dispersed
Bma08g00520 Bma-Chr8:28220963 Bma12g00676 Bma-Chr12:28181679 0 dispersed
Bma08g00520 Bma-Chr8:28220963 Bma08g00521 Bma-Chr8:28468068 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00520 K03234 - csv:101208886 1618.59