Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00521 | ATTATGGACTTGAAACACAACATTCGTAATATGTCTGTCATTGCACATGTTGATCATGGAAAGTCAACCCTTACCGATTCACTTGTTGCTGCTGCTGGTATCATTGCTCAGGAGGTTGCAGGTGATGTTCGGATGACAGATACTCGTGCTGATGAAGCAGAACGCGGTATCACTATTAAATCCACTGGAATTTCATTATACTATGAAATGTCGGATGAGTCTTTGAAGAATTACAAGGGAGAGCGAGTTGGAAATGAGTATCTCATAAATCTCATTGATTCTCCTGGACATGTTGACTTCTCCTCTGAGGTGACTGCTGCTCTCCGTATCACTGATGGTGCACTGGTGGTGGTAGATTGCATTGAAGGAGTTTGCGTCCAGACTGAAACTGTCCTCCGTCAGGCTCTTGGAGAGAGAATTAGGCCTGTTTTGACAGTTAACAAGATGGACAGGTGCTTCCTTGAACTTCAGGTTGATGGAGAAGAAGCTTATCAAACATTCCAAAGGGTCATTGAGAATGCAAATGTCATCATGGCCACATATGAGGATCCTCTTCTTGGTGACGTGCAGGTCTATCCTGAGAAAGGAACGGTGGCGTTCTCCGCTGGTTTACATGGTTGGGCTTTCACGCTGACCAACTTTGCCAAAATGTATGCCTCCAAATTCGGGGTTGATGAGTCAAAGATGATGGAGAGGCTTTGGGGTGAAAATTTCTTTGATCCTGCCACTAAAAAATGGACCAGCAAAAATACAGGTTCTGGAACATGCAAGCGTGGATTTGTTCAGTTCTGTTATGAGCCCATCAAGCAAATTATTGCAACTTGCATGAACGACCAGAAGGATAAGCTTTGGCCTATGTTGAAAAAGTTGGGTGTGACTATGAAGTCAGATGAGAAGGAATTGATGGGCAAGGCGCTGATGAAACGAGTCATGCAAACTTGGCTACCAGCTAGCACAGCTCTCTTGGAAATGATGATCTTTCATCTCCCTTCTCCATCAAAGGCCCAGAGGTATCGTGTTGAGAATTTGTATGAGGGCCCTCTTGATGACCAATATGCTACTGCAATTAGAAACTGTGACCCTGATGGACCACTAATGCTCTATGTGTCAAAGATGATTCCGGCATCTGACAAGGGTCGGTTCTTTGCTTTTGGTCGTGTTTTCTCTGGTAGAGTTGCCACTGGTATGAAAGTGAGGATTATGGGGCCTAACTACGTTCCTGGTGAGAAAAAGGACTTGTATGTTAAAAGTGTTCAGAGAACTGTCATTTGGATGGGAAAGAAGCAAGAAACCGTTGAGGATGTTCCTTGCGGGAACACAGTGGCCATGGTTGGGCTCGATCAGTTTATTACCAAAAATGCTACTTTGACAAATGAGAAAGAAGTTGATGCACACCCAATTCGAGCAATGAAATTTTCAGTTTCACCAGTTGTACGAGTGGCTGTTCAGTGCAAGGTGGCATCTGACCTTCCCAAACTTGTTGAAGGACTAAAACGTTTGGCAAAGTCGGATCCTATGGTTGTTTGTTCAATGGAAGAGTCTGGAGAGCACATCATTGCTGGGGCTGGAGAATTGCACCTTGAAATCTGTTTGAAGGATTTGCAGGATGACTTCATGGGCGGTGCTGAAATTGTGAAATCTGATCCTGTCGTTTCATTCCGTGAGACTGTTCTTGAGAAGTCGTGCCGAACAGTCATGAGTAAGTCACCCAATAAACATAACCGACTGTACATGGAAGCTCGACCATTGGAAGATGGACTTGCTGAGGCAATTGATGATGGTCGAATTGGCCCTAGAGATGACCCAAAAGTGCGTTCAAAAATTTTGGCGGAGGAGTTCGGTTGGGACAAGGATCTTGCCAAAAAGATATGGTGTTTTGGCCCTGAAACAACTGGGCCCAATATGGTTGTGGATATGTGCAAGGGAGTTCAGTATCTCAATGAAATAAAGGACTCCGTCGTTGCTGGATTCCAGTGGGCATCAAAAGAAGGTGCCTTGTGTGAAGAAAACATGAGGGGCATATGTTTTGAAGTTTGCGATGTGGTTCTGCACGCCGATGCAATCCACAGAGGAGGTGGTCAGGTTATCCCTACTGCTAGGAGGGTCATCTATGCTTCCCAAATCACAGCCAAGCCCCGACTTCTGGAGCCAGTCTATTTGGTGGAGATCCAAGCACCTGAGCAGGCACTTGGAGGTATTTATAGCGTTCTTAACCAGAAACGTGGGCATGTGTTTGAAGAAATGCAGAGGCCTGGTACCCCTCTCTATAACATCAAGGCCTACCTCCCTGTGGTTGAGTCCTTTGGCTTTTCAGGCACTCTGCGGGCTGCCACCTCTGGGCAGGCGTTTCCTCAGTGTGTGTTTGATCATTGGGATATGATGTCGTCTGACCCGTTAGAATCTGGATCCCAGGCTGCCAATCTTGTTGTTGAAATTCGAAAGAGGAAGGGGTTGAAGGAGCAGATGACACCACTCTCTGATTTCGAGGACAAGCTTTAA | 2499 | 45.74 | IMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMSDESLKNYKGERVGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSGTCKRGFVQFCYEPIKQIIATCMNDQKDKLWPMLKKLGVTMKSDEKELMGKALMKRVMQTWLPASTALLEMMIFHLPSPSKAQRYRVENLYEGPLDDQYATAIRNCDPDGPLMLYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGEKKDLYVKSVQRTVIWMGKKQETVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVCSMEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIVKSDPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEDGLAEAIDDGRIGPRDDPKVRSKILAEEFGWDKDLAKKIWCFGPETTGPNMVVDMCKGVQYLNEIKDSVVAGFQWASKEGALCEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQITAKPRLLEPVYLVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVVESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLESGSQAANLVVEIRKRKGLKEQMTPLSDFEDKL | 832 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 28468068 | 28471112 | + | Bma027742.1 | Bma08g00521 | 87348 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00521 | 832 | PRINTS | GTP-binding elongation factor signature | 10 | 23 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | PRINTS | GTP-binding elongation factor signature | 106 | 117 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | PRINTS | GTP-binding elongation factor signature | 54 | 62 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | PRINTS | GTP-binding elongation factor signature | 90 | 100 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | PRINTS | GTP-binding elongation factor signature | 142 | 151 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | TIGRFAM | small_GTP: small GTP-binding protein domain | 9 | 165 | IPR005225 | GO:0005525 | |
Bma08g00521 | 832 | Pfam | Elongation factor Tu domain 2 | 383 | 456 | IPR004161 | GO:0005525 | |
Bma08g00521 | 832 | SUPERFAMILY | EF-G C-terminal domain-like | 716 | 825 | IPR035647 | - | |
Bma08g00521 | 832 | Gene3D | Yeast translation eEF2 (G' domain) | 215 | 315 | - | - | |
Bma08g00521 | 832 | SUPERFAMILY | EF-G C-terminal domain-like | 473 | 549 | IPR035647 | - | |
Bma08g00521 | 832 | SUPERFAMILY | Ribosomal protein S5 domain 2-like | 551 | 715 | IPR020568 | - | |
Bma08g00521 | 832 | SUPERFAMILY | Translation proteins | 332 | 465 | IPR009000 | - | |
Bma08g00521 | 832 | Gene3D | - | 3 | 214 | IPR027417 | - | |
Bma08g00521 | 832 | CDD | EF2_snRNP_III | 476 | 548 | - | - | |
Bma08g00521 | 832 | Gene3D | Translation factors | 332 | 473 | - | - | |
Bma08g00521 | 832 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 6 | 333 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | Gene3D | - | 558 | 711 | IPR014721 | - | |
Bma08g00521 | 832 | Pfam | Elongation factor G C-terminus | 713 | 800 | IPR000640 | - | |
Bma08g00521 | 832 | Pfam | Elongation factor Tu GTP binding domain | 6 | 331 | IPR000795 | GO:0003924|GO:0005525 | |
Bma08g00521 | 832 | Pfam | Elongation Factor G, domain III | 476 | 538 | IPR041095 | - | |
Bma08g00521 | 832 | CDD | EF2 | 9 | 219 | - | - | |
Bma08g00521 | 832 | CDD | EF2_II | 364 | 459 | - | - | |
Bma08g00521 | 832 | Gene3D | - | 712 | 832 | - | - | |
Bma08g00521 | 832 | Gene3D | Elongation Factor G (Translational Gtpase), domain 3 | 475 | 552 | - | - | |
Bma08g00521 | 832 | CDD | aeEF2_snRNP_like_IV | 548 | 720 | - | - | |
Bma08g00521 | 832 | CDD | eEF2_snRNP_like_C | 716 | 794 | - | - | |
Bma08g00521 | 832 | Pfam | Elongation factor G, domain IV | 599 | 710 | IPR005517 | GO:0005525 | |
Bma08g00521 | 832 | SMART | EFG_IV_2 | 595 | 711 | IPR005517 | GO:0005525 | |
Bma08g00521 | 832 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 2 | 330 | IPR027417 | - | |
Bma08g00521 | 832 | PANTHER | - | 1 | 831 | - | - | |
Bma08g00521 | 832 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 47 | 62 | IPR031157 | - | |
Bma08g00521 | 832 | PANTHER | TRANSLATION ELONGATION FACTOR-RELATED | 1 | 831 | - | - | |
Bma08g00521 | 832 | SMART | EFG_C_a | 713 | 802 | IPR000640 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00521 | Bma-Chr8:28468068 | Bma12g00676 | Bma-Chr12:28181679 | 0 | dispersed | |
Bma08g00520 | Bma-Chr8:28220963 | Bma08g00521 | Bma-Chr8:28468068 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00521 | K03234 | - | qsu:112038254 | 1617.82 |