Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00538 ATATACCTGTGTCCAGAGCCTTATCCTGAGGCAAATATGGAGTTTGTCAAGTCTAATGGGATCACTTTGTATCAATTTGGAATTGAAGGCCATAAGGTGTATATTGATGATCATTTCTTCATTCAGGAGCCCTATGTAAACATCCCAGACAAAAAAATTCGCGAGGCACTGAAAGTTATGCTTGACGTCAGGAATCACCCACTTCTAATTCACTGTAACAGAGGAAAGCATCGAACTGGTTGTTTGGTAGGATGCCTGCGTAAAATGCAGAGATGGTGCTTAACATCTGTATTTTCCGAGTACCAGCGGTTTGCAGCCGCTAAAGCTAGAGTTTGTGATCAGAGGTTCATAGAAGTTTTTGATGTTTCTACCTTAAGCCATCTGCCCATTCCTTTTTCTAGCTTTCGACAGTAA 414 41.3 IYLCPEPYPEANMEFVKSNGITLYQFGIEGHKVYIDDHFFIQEPYVNIPDKKIREALKVMLDVRNHPLLIHCNRGKHRTGCLVGCLRKMQRWCLTSVFSEYQRFAAAKARVCDQRFIEVFDVSTLSHLPIPFSSFRQ 137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 31588203 31589869 - Bma027784.1 Bma08g00538 87365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00538 137 Gene3D Protein tyrosine phosphatase superfamily 1 124 IPR029021 -
Bma08g00538 137 PRINTS Plant and fungal dual specificity phosphatase signature 2 15 IPR020428 GO:0016791
Bma08g00538 137 PRINTS Plant and fungal dual specificity phosphatase signature 21 35 IPR020428 GO:0016791
Bma08g00538 137 PRINTS Plant and fungal dual specificity phosphatase signature 48 62 IPR020428 GO:0016791
Bma08g00538 137 Pfam Tyrosine phosphatase family 1 126 IPR004861 -
Bma08g00538 137 ProSitePatterns Tyrosine specific protein phosphatases active site. 70 80 IPR016130 GO:0016311|GO:0016791
Bma08g00538 137 PANTHER - 1 134 - -
Bma08g00538 137 PANTHER TYROSINE-PROTEIN PHOSPHATASE 1 134 - -
Bma08g00538 137 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 1 121 IPR029021 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01405 Bma-Chr2:56279284 Bma08g00538 Bma-Chr8:31588203 1.48E-67 dispersed
Bma08g00533 Bma-Chr8:31164361 Bma08g00538 Bma-Chr8:31588203 3.27E-41 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00538 K18045 - gmx:100814279 218.394