Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00546 ATGAAACAGATAGCAAAGAGGAGACAGTTCATCAACACGAGAACCAGATCATCTCGCATAGAGAAATTAAAAACCCACGCACAAATCTCTGAGTTGGAATCTGGATTCCAGTGGACTCAGCACCATCCACCTTCGACACCCATCACCAGAAGAACAGACCAAATTACGCCACCACAGCTACTGCAGAACCAAGATCTGGCCGGCTACGTCCCTTTTCGCCAGCTCTTGGAACGTGATGACGCCATTGATGCCCATCAATTAGCACCATCCACAAAGCAAATTCTGGACCACAACGTTGAATATGCAACCCCGATGGGAATGAAGAGCGCAGTAGGAGAGATTGTTGGAGTCGATGGTGGTCATATCGTCCGTTCCACTAGCCGAAAAGACCGACACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGGCTTTCAGCCCACACCGCAATTCAGTTCTATGACGTTCAAGATCGCTTAGGCTATGATCGACCCAGCAAAGCGGTCGATTGGCTTATAAAGAAGGCACAGTCCGCTATTGACAAGCTCACAGAGTTACCGCCTTGCTATGCCACCACCATCGTTGCAGATGCTGACACGAATAATGGCGGTAACGAGATGGTGATTTCTGCAGATCAATCGGAGTCATCCGGATGCAATTTGCACCTCCGAAGACATTTGGATGAGAATCCAGATAATAATAATTCGGGTTTCGTTCCTCCTCCGTTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTCCCCACAAGCTCTGGGGCGTCCCCCATCAATTTCCAGACCTTCCCACCAGATATACTTTCACGAACCGCAAACCCCATTCAAGATCTTGGCCTTTCTCTCCACACTTTTCAAGATCCTGGTCTGATTCACTGTCAGGGAGAGCCAAACCACTCGCCACATACCGATCAAAACCTTTTCTCCGACTCGCATCAGGTAGGGTATGAACCGAGTTACCAAAGAATGGCAGCTTGGGGAAATGATAGAGGCGTAGAACATGGAGGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTCGGTCAGGGTGGCTCGGCTGCATTATCACAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGTGTCATTTCGCGGGTGGAACGATCTTTCAATTGCTGCATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGTACTCGTTTCGTTTCTGATGGGCTACATGGCTTTTGCATTCCCGGACATATTCCGGTCGACGACGACAGCGGCATGGTTTCCGAACAATTGTCATCTTCTTCTATGAACTCCCACCGTTAA 1338 49.1 MKQIAKRRQFINTRTRSSRIEKLKTHAQISELESGFQWTQHHPPSTPITRRTDQITPPQLLQNQDLAGYVPFRQLLERDDAIDAHQLAPSTKQILDHNVEYATPMGMKSAVGEIVGVDGGHIVRSTSRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQSAIDKLTELPPCYATTIVADADTNNGGNEMVISADQSESSGCNLHLRRHLDENPDNNNSGFVPPPLSSVALTDSMKTFFPTSSGASPINFQTFPPDILSRTANPIQDLGLSLHTFQDPGLIHCQGEPNHSPHTDQNLFSDSHQVGYEPSYQRMAAWGNDRGVEHGGGFVFSSLPIFGQGGSAALSQRGPLQSSYSPSVSFRGWNDLSIAASKDQKTHSLHQSSLFGTRFVSDGLHGFCIPGHIPVDDDSGMVSEQLSSSSMNSHR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33039404 33040741 - Bma027805.1 Bma08g00546 87373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4 102 207 - -
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 218 444 IPR005333 GO:0003700
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4 218 444 - -
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 207 IPR005333 GO:0003700
Bma08g00546 445 ProSiteProfiles TCP domain profile. 128 186 IPR017887 -
Bma08g00546 445 Pfam TCP family transcription factor 126 202 IPR017887 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00546 Bma12g00712 CCT
Bma08g00546 Bma12g00712 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00546 Bma-Chr8:33039404 Bma10g00483 Bma-Chr10:5711482 1.41E-64 dispersed
Bma12g00942 Bma-Chr12:41224019 Bma08g00546 Bma-Chr8:33039404 1.01E-15 transposed
Bma14g01095 Bma-Chr14:13615014 Bma08g00546 Bma-Chr8:33039404 2.44E-19 transposed
Bma12g00712 Bma-Chr12:31865208 Bma08g00546 Bma-Chr8:33039404 4.97E-69 wgd
Bma03g01315 Bma-Chr3:26090669 Bma08g00546 Bma-Chr8:33039404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57745 PF03634 TCP 1.30E-31 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00546 - - gmx:100796390 385.571