Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00546 ATGAAACAGATAGCAAAGAGGAGACAGTTCATCAACACGAGAACCAGATCATCTCGCATAGAGAAATTAAAAACCCACGCACAAATCTCTGAGTTGGAATCTGGATTCCAGTGGACTCAGCACCATCCACCTTCGACACCCATCACCAGAAGAACAGACCAAATTACGCCACCACAGCTACTGCAGAACCAAGATCTGGCCGGCTACGTCCCTTTTCGCCAGCTCTTGGAACGTGATGACGCCATTGATGCCCATCAATTAGCACCATCCACAAAGCAAATTCTGGACCACAACGTTGAATATGCAACCCCGATGGGAATGAAGAGCGCAGTAGGAGAGATTGTTGGAGTCGATGGTGGTCATATCGTCCGTTCCACTAGCCGAAAAGACCGACACAGCAAGGTCTACACAGCGAAAGGCCCTCGCGACCGTCGTGTCCGGCTTTCAGCCCACACCGCAATTCAGTTCTATGACGTTCAAGATCGCTTAGGCTATGATCGACCCAGCAAAGCGGTCGATTGGCTTATAAAGAAGGCACAGTCCGCTATTGACAAGCTCACAGAGTTACCGCCTTGCTATGCCACCACCATCGTTGCAGATGCTGACACGAATAATGGCGGTAACGAGATGGTGATTTCTGCAGATCAATCGGAGTCATCCGGATGCAATTTGCACCTCCGAAGACATTTGGATGAGAATCCAGATAATAATAATTCGGGTTTCGTTCCTCCTCCGTTGTCTTCAGTTGCCCTAACAGACAGTATGAAAACCTTCTTCCCCACAAGCTCTGGGGCGTCCCCCATCAATTTCCAGACCTTCCCACCAGATATACTTTCACGAACCGCAAACCCCATTCAAGATCTTGGCCTTTCTCTCCACACTTTTCAAGATCCTGGTCTGATTCACTGTCAGGGAGAGCCAAACCACTCGCCACATACCGATCAAAACCTTTTCTCCGACTCGCATCAGGTAGGGTATGAACCGAGTTACCAAAGAATGGCAGCTTGGGGAAATGATAGAGGCGTAGAACATGGAGGTGGGTTTGTTTTCAGCTCGCTGCCAATTTTCGGTCAGGGTGGCTCGGCTGCATTATCACAGAGGGGACCCCTTCAGTCCAGTTACTCACCTTCTGTGTCATTTCGCGGGTGGAACGATCTTTCAATTGCTGCATCCAAAGACCAGAAGACTCATTCACTTCACCAATCTTCGTTATTTGGTACTCGTTTCGTTTCTGATGGGCTACATGGCTTTTGCATTCCCGGACATATTCCGGTCGACGACGACAGCGGCATGGTTTCCGAACAATTGTCATCTTCTTCTATGAACTCCCACCGTTAA 1338 49.1 MKQIAKRRQFINTRTRSSRIEKLKTHAQISELESGFQWTQHHPPSTPITRRTDQITPPQLLQNQDLAGYVPFRQLLERDDAIDAHQLAPSTKQILDHNVEYATPMGMKSAVGEIVGVDGGHIVRSTSRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAQSAIDKLTELPPCYATTIVADADTNNGGNEMVISADQSESSGCNLHLRRHLDENPDNNNSGFVPPPLSSVALTDSMKTFFPTSSGASPINFQTFPPDILSRTANPIQDLGLSLHTFQDPGLIHCQGEPNHSPHTDQNLFSDSHQVGYEPSYQRMAAWGNDRGVEHGGGFVFSSLPIFGQGGSAALSQRGPLQSSYSPSVSFRGWNDLSIAASKDQKTHSLHQSSLFGTRFVSDGLHGFCIPGHIPVDDDSGMVSEQLSSSSMNSHR 445
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33039404 33040741 - Bma027805.1 Bma08g00546 87373

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4 102 207 - -
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 218 444 IPR005333 GO:0003700
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4 218 444 - -
Bma08g00546 445 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 102 207 IPR005333 GO:0003700
Bma08g00546 445 ProSiteProfiles TCP domain profile. 128 186 IPR017887 -
Bma08g00546 445 Pfam TCP family transcription factor 126 202 IPR017887 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00546 - - - gmx:100796390 385.571
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00546 Bma12g00712 CCT
Bma08g00546 Bma12g00712 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00546 Bma-Chr8:33039404 Bma10g00483 Bma-Chr10:5711482 1.41E-64 dispersed
Bma12g00942 Bma-Chr12:41224019 Bma08g00546 Bma-Chr8:33039404 1.01E-15 transposed
Bma14g01095 Bma-Chr14:13615014 Bma08g00546 Bma-Chr8:33039404 2.44E-19 transposed
Bma12g00712 Bma-Chr12:31865208 Bma08g00546 Bma-Chr8:33039404 4.97E-69 wgd
Bma03g01315 Bma-Chr3:26090669 Bma08g00546 Bma-Chr8:33039404 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g203 . . . . Bpe12g00269 . . Bma08g00546 . . Cma02g00071 . Car02g00060 . . . . . . . . . . . . . . . . . . . . . . Lsi10g01578 . . . . Blo13g00343 . Bda15g00925 . . . Bma12g00712 Sed01g0139 Cmo02g00070 . . . . . . Cpe05g01523 Bhi10g01073 Tan05g0714 Cmetu11g1077 . Hepe08g0578 . . . . . . . . . Lsi11g01684 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g00844 . 35 261 TCP Transcription Factor Family AT5G23280 58.1 2.7e-58 222.2
Bma03g00454 . 35 261 TCP Transcription Factor Family AT5G23280 52.7 1.7e-52 203.0
Bma14g01851 . 103 186 TCP Transcription Factor Family AT3G47620 88.1 2.0e-36 150.6
Bma13g00592 . 6 259 TCP Transcription Factor Family AT3G27010 58.1 7.6e-66 247.7
Bma14g01394 . 19 277 TCP Transcription Factor Family AT3G27010 54.8 1.8e-59 226.5
Bma14g01410 . 7 257 TCP Transcription Factor Family AT3G27010 55.3 5.8e-58 221.5
Bma08g00844 . 8 259 TCP Transcription Factor Family AT5G08330 53.8 4.7e-60 228.0
Bma03g00454 . 1 259 TCP Transcription Factor Family AT5G08330 51.2 8.0e-60 227.3
Bma08g00244 BCT,CCT 30 123 TCP Transcription Factor Family AT5G60970 78.9 5.8e-38 155.2
Bma01g01086 . 31 132 TCP Transcription Factor Family AT3G02150 78.8 1.4e-39 160.6
Bma03g01315 BCT,CCT,ECH 8 192 TCP Transcription Factor Family AT2G31070 54.0 7.9e-43 171.4
Bma08g00546 CCT,ECH 112 296 TCP Transcription Factor Family AT2G31070 50.5 1.5e-38 157.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010967 3 0 2 3 2 1 1 1 1 1 1 1 1 0 1 1 1 0 0 1 0 0 1 1 1 1 1 1 1 1 30
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57745 PF03634 TCP 1.30E-31 No_clan Bma TF