Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00556 GGCAGCGAAATGGAAGGCGACGACGAGTATAGAAGGAAAGAACGGGTCGCATTGGTGGCTATCGTGGTTCTCGCTTCCCTTGCCCTAGCTTCGCTGCTCGTCGCCTTCAGCTATTACTGCTACATTAGCAATAAGGTTTCCAAACGTCTTAGGACCCAGAAAATTATCGGATTGACTCGTTCTCTCTTTATAGGGAATAACAATGAAAATAAAGGTGGTTTTGAAAATCTTAAAGTCGTTGCCGAGGGAGGTCCCCAGGTTTTCACCTTTAAGCAGCTGCACTCAGCAACTGGTGGTTTCAGCAAGTCAAATGTGGTTGGACATGGCGGGTTTGGCTCAGTTTACAGAGGAGTTCTAAGCGATGGGAGGAAAGTTGCAATTAAGCTGATGGATCAGCCGGGAAAACAGGGCGAAGATGAATTTAAAGTGGAGGTGGAATTGTTGAGCCGGCTTCATTCTCCATATTTACTTGCACTGCTCGGGTATTGCTCCGATAACAATCATAAACTTCTCGTCTATGAATTCATGGCAAATGGAGGACTTCAGGAGCATCTTTATCCCATTCCGAATTCTAGTGCAGCCTCCTTGAAGCTGGACTGGGAAACACGGTTGAGAATTGCTCTTGAAGCTGCAAAAGGATTGGAGTATCTTCACGAACACGTAAATCCGCCGGTTATTCACAGAGATTTCAAAAGCAGCAACATCCTCTTGGATAGATACTTCCACGCCAAAGTTTCAGATTTTGGACTTGCGAAGATTGGGTCTGACAAAGTTGGAGGACATGTTTCAACACGAGTTTTAGGCACGCAAGGATATGTCGCTCCTGAGTATGCACTAACCGGACATTTGACGACAAAGTCAGATGTGTATAGTTTTGGGGTCGTTCTATTGGAGTTGCTCACAGGAAGAGTTCCTGTCGATATGAAACGGCCTCCTGGAGAAGCTACTCTGGTTTCTTGGGCTTTGCCGAGGCTGACCGACAGAGAGAAAGTAGTGGAGATCATGGATCCCACGTTGGAGGGTCAGTACACAATGAAGGACGTGATTCAGGTGGCAGCCATTGCTGCTATGTGTGTTCAACCAGAGGCAGATTATAGGCCACTGATGGCTGATGTTGTCCATTCTCTTGTTCCGCTTGCCAAAAACAACCGAACAACCTCGAAGACCAACAATGCTGCGGATTTAATCGCCATTAAGTCCCCGAGCCCTCAGGAATGTCGGAAAAGCGAGAGTGGAAGACTAATTATATCGAAACTTAGCCAATCGGATTTAATCTCTGGTAGTCTTGTTGAATGA 1296 46.37 GSEMEGDDEYRRKERVALVAIVVLASLALASLLVAFSYYCYISNKVSKRLRTQKIIGLTRSLFIGNNNENKGGFENLKVVAEGGPQVFTFKQLHSATGGFSKSNVVGHGGFGSVYRGVLSDGRKVAIKLMDQPGKQGEDEFKVEVELLSRLHSPYLLALLGYCSDNNHKLLVYEFMANGGLQEHLYPIPNSSAASLKLDWETRLRIALEAAKGLEYLHEHVNPPVIHRDFKSSNILLDRYFHAKVSDFGLAKIGSDKVGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGEATLVSWALPRLTDREKVVEIMDPTLEGQYTMKDVIQVAAIAAMCVQPEADYRPLMADVVHSLVPLAKNNRTTSKTNNAADLIAIKSPSPQECRKSESGRLIISKLSQSDLISGSLVE 431
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 33652638 33655477 + Bma027824.1 Bma08g00556 87383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00556 431 PANTHER OS07G0227300 PROTEIN 4 409 - -
Bma08g00556 431 CDD STKc_IRAK 106 379 - -
Bma08g00556 431 ProSiteProfiles Protein kinase domain profile. 100 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00556 431 SUPERFAMILY Protein kinase-like (PK-like) 83 376 IPR011009 -
Bma08g00556 431 Pfam Protein kinase domain 101 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00556 431 Gene3D Transferase(Phosphotransferase) domain 1 176 401 - -
Bma08g00556 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 225 237 IPR008271 GO:0004672|GO:0006468
Bma08g00556 431 PANTHER OS01G0750732 PROTEIN 4 409 - -
Bma08g00556 431 Gene3D Phosphorylase Kinase; domain 1 66 175 - -
Bma08g00556 431 ProSitePatterns Protein kinases ATP-binding region signature. 106 128 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00293 Bma-Chr5:8598897 Bma08g00556 Bma-Chr8:33652638 3.51E-137 dispersed
Bma05g00298 Bma-Chr5:9014537 Bma08g00556 Bma-Chr8:33652638 4.37E-137 dispersed
Bma08g00556 Bma-Chr8:33652638 Bma10g00543 Bma-Chr10:6598170 1.59E-112 dispersed
Bma04g00084 Bma-Chr4:681069 Bma08g00556 Bma-Chr8:33652638 2.99E-98 transposed
Bma04g00799 Bma-Chr4:9146411 Bma08g00556 Bma-Chr8:33652638 3.33E-16 transposed
Bma09g00351 Bma-Chr9:30326422 Bma08g00556 Bma-Chr8:33652638 7.98E-57 transposed
Bma10g01174 Bma-Chr10:41329725 Bma08g00556 Bma-Chr8:33652638 3.08E-13 transposed
Bma02g00609 Bma-Chr2:14042659 Bma08g00556 Bma-Chr8:33652638 1.20E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66662 PF00069 Pkinase 9.70E-43 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00556 - - zju:107435023 625.935