Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00575 ATGGCCAGGATCCTCGAGAGACTATCATATGGACTGTGGATTGCGACGGTGGGAAATAGTTTGGTCGAGTCCGCTCATCTTAAGCACAACGTCTCATCGGTACATTGGCTTCCCGCTACAGCCACTTGGTACGGAAGCCCAGAAGGAGACGGAAGCGACGGAGGAGCGTGTGGGTATGGAAACTTAGTAGATGTGAAGCCATTGAGGGCAAGGGTAGGCGCGGTGAGCCCAGTTTTGTTCAAGAATGGAGAGGGCTGCGGAGCTTGCTTCAAGGTAAAGTGCTTGGACCAAACCATATGCACTAGACGAGCCGTGACTATAATCGTGACAGACGAGTGCCCCGGTGGATACTGTGCCGGTGGCCGCACCCACTTCGACCTCAGCGGTGCCGCCTTCGGCCGCATGGCTGTATCCGGTGAAAGTGGGCACCTCAGGAACCGAGGCGAAATCCCAGTCATCTACAAAAGGTGGACTCAATGCAAATATCCCGGCAAGAACATAGCTTTCCACGTGAACGAAGGTTCGACAGATTACTGGTTCTCGCTCCTGGTTGAGTTCGAGGATGGCGATGGAGATATTGGGTCAATGCACATAAGAGAAGCAAGCTCTGATATATGGTTGGAGATGAATCATCTATGGGGTGCGAATTGGTGTATTATCGGAGGGCCTCTAAAAGGGCCATTTTCGGTGAAACTTGAGACATTGTCGACGGCCAGAACTCTATCAGCCAGAGACGTGATTCCAAGCAACTGGTCGCCTAAAGCCACTTATCCCTCTCGCTTGAAATTCATCTCCTAA 798 52.01 MARILERLSYGLWIATVGNSLVESAHLKHNVSSVHWLPATATWYGSPEGDGSDGGACGYGNLVDVKPLRARVGAVSPVLFKNGEGCGACFKVKCLDQTICTRRAVTIIVTDECPGGYCAGGRTHFDLSGAAFGRMAVSGESGHLRNRGEIPVIYKRWTQCKYPGKNIAFHVNEGSTDYWFSLLVEFEDGDGDIGSMHIREASSDIWLEMNHLWGANWCIIGGPLKGPFSVKLETLSTARTLSARDVIPSNWSPKATYPSRLKFIS 265
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 34100714 34102161 + Bma027846.1 Bma08g00575 87402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 235 252 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 74 85 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Bma08g00575 265 PANTHER EXPANSIN-LIKE PROTEIN B1 24 264 - -
Bma08g00575 265 Gene3D - 19 160 IPR036908 -
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 35 50 IPR007118 GO:0005576
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 53 71 IPR007118 GO:0005576
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Bma08g00575 265 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Bma08g00575 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 54 165 IPR007112 -
Bma08g00575 265 SMART dpbb_1 72 154 IPR007112 -
Bma08g00575 265 Pfam Expansin C-terminal domain 167 248 IPR007117 -
Bma08g00575 265 SUPERFAMILY Barwin-like endoglucanases 32 164 IPR036908 -
Bma08g00575 265 Pfam Lytic transglycolase 74 153 IPR009009 -
Bma08g00575 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 259 IPR007117 -
Bma08g00575 265 PANTHER EXPANSIN-B3 24 264 - -
Bma08g00575 265 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Bma08g00575 265 Gene3D - 161 260 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00575 Bma12g00524 CCT
Bma02g01371 Bma08g00575 CCT
Bma08g00575 Bma12g00524 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01383 Bma-Chr6:50604388 Bma08g00575 Bma-Chr8:34100714 2.19E-64 dispersed
Bma06g01384 Bma-Chr6:50611607 Bma08g00575 Bma-Chr8:34100714 3.27E-70 dispersed
Bma08g00575 Bma-Chr8:34100714 Bma12g00124 Bma-Chr12:1846061 1.29E-35 dispersed
Bma02g01371 Bma-Chr2:56088442 Bma08g00575 Bma-Chr8:34100714 1.12E-144 wgd
Bma03g00730 Bma-Chr3:6522555 Bma08g00575 Bma-Chr8:34100714 1.57E-171 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00575 K20628 - cit:102618203 433.335