Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00585 ATGCAGAACCACCCTTTGCAGATGGCGCCGTGGCATCAATTCATCCGGTGCGTTAAAGAAGGTGGAACTGCTTACAGCAAGGCCCATGGTTGCGAAATCTGGGACTTCGCTTCCAAAAATCCTGAGTTCAACTCTATTTTCAACGACGCAATGGCCTGTGTAGCAAAAGTCGTGACGGATGCATTCTTGTTGGAATACAAAGATGGGTTCGCCACAGTTGGATCGCTCCTCGATCTTGGAGGAGGGACGGGAAATGTCATAGCTGAGATCGTGAAATGTCATCCACACATCAAAGGAATCAACTTCGATTTGCCTCACGTCGTGGCCACAGCACCCGTCTTATCCGGAGTTACCCACGTCAGTGGAAACATGTTCGAGACTATTCCCAACGCCGACGCCATTTTTATGAAATGGGTGATGCATGATTGGAGAGACGAAAACTGTGTAAAGATACTGAAGAATTGCAGGAAATCGATACCGGAGAAGACAGGAAAGGTGATAATCTTGGATATAGTTCTGAATGCAGAGGGTGATGAGCCGTTCGACGATATGCGAGTGTTGTTTGATCTCGTGATGGTGGCTCATAGCCCAGGAGGAAAAGAAAGGACAGAGCTGGAATGGAAGAAATTGGTAAAGGAAGGAGGGTTTAAAAGCTACAAAATCACTAAAATTCCTGCTCTTCCTTCCATCATAGAAGCATTTCCTTAA 708 46.33 MQNHPLQMAPWHQFIRCVKEGGTAYSKAHGCEIWDFASKNPEFNSIFNDAMACVAKVVTDAFLLEYKDGFATVGSLLDLGGGTGNVIAEIVKCHPHIKGINFDLPHVVATAPVLSGVTHVSGNMFETIPNADAIFMKWVMHDWRDENCVKILKNCRKSIPEKTGKVIILDIVLNAEGDEPFDDMRVLFDLVMVAHSPGGKERTELEWKKLVKEGGFKSYKITKIPALPSIIEAFP 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 36411673 36412573 + Bma027866.1 Bma08g00585 87412

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00585 235 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 235 IPR016461 GO:0008168
Bma08g00585 235 PANTHER O-METHYLTRANSFERASE 1 234 IPR016461 GO:0008168
Bma08g00585 235 Gene3D Vaccinia Virus protein VP39 1 235 IPR029063 -
Bma08g00585 235 PANTHER (R,S)-RETICULINE 7-O-METHYLTRANSFERASE-LIKE ISOFORM X1 1 234 - -
Bma08g00585 235 CDD AdoMet_MTases 76 173 - -
Bma08g00585 235 Pfam O-methyltransferase domain 11 217 IPR001077 GO:0008171
Bma08g00585 235 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 2 233 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00585 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - qsu:111998567 370.933
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma02g01316 Bma08g00585 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01316 Bma-Chr2:55291674 Bma08g00585 Bma-Chr8:36411673 3.51E-46 dispersed
Bma08g00585 Bma-Chr8:36411673 Bma08g00738 Bma-Chr8:43398792 4.96E-68 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g226 . . . . . . . . Cmo19g00776 Cmo11g01762 . . . . . Cpe04g00615 . Bhi05g01656 Tan02g0632 . . . . . . . . . . . . Cone12ag1254 Cone8ag1309 . . . Csa07g00140 . Cme01g01207 . . . . . . . Bma08g00585 . . . . Cma19g00763 . . . . . . . . . . . . . . . . . . Lsi11g01240 . Chy01g00646 Cme11g01172
Vvi12g477 . . . . Bpe12g00244 Bpe15g00688 . Bma08g00585 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g00470 . Blo13g00375 Bda14g00741 . Bpe14g00718 . Bma02g01316 . Sed01g0671 . . . Cma19g00899 . . . . Bhi10g01162 Tan05g0792 Cmetu11g2226 . Hepe08g0524 . . . . . . . . . Lsi11g01404 . Chy01g00466 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002929 4 1 3 1 4 2 1 2 2 1 2 2 1 1 1 1 2 4 1 2 1 3 1 1 1 1 2 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00585 Bma_Chr08 FPKM 111.053665 117.286255 80.72625 80.220947 94.769714 97.479469 93.016815 88.983337 89.53363 86.890503