Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00609 ATGGCTGCAGCTTTCACTCATTATTTCTCTTACAATTCCGTTGTACCCAGAAACTCCGTTGAGAAACGGGTAGCCGGATTAGGACCCGAAAATTTGGACATAGACACCAACCCGAGATTCTGCAAGTCGAATCCCACTTCTTTCAGAAAGAAATTTAGTAATAATAGTTGGGCAGAATCGCAGAATTTCTTGCTCAAAAGGACCATTTGTGATTTTATGGATTCGGGTCGCATTGAAAGTGCACTCCACCTGTTTGAAAGATTGTCTCAGTTGGACATTTACATCTGCAATGTCTTGATCAGGGGATTGACGGATCAAGGAATGTTTAAGGAAGCTATTAATATCTATTACCGGATGAATTTCCAAGGCATTGGCACTGATAAATATACGTACCCTTTTCTAATCAAATCAATTGGTGGGTTGTTATCATTTGAAGAAGGCCAAAAGGTTCACGCTAAGTTATTTAAAGTTGGGCTGGAATTGGACGTTTACATTTGCAATTCTCTTCTTTTCATGTACGCAAAGCTTGGATTTATAGAGCTCGCAGAGAGGGTATTTCAAGAAATGCCTCTCAAAGACCTGGTTAGTTGGAACTCGATGACGAGTGGCTATGTTTCGGCCATGGATGGTTTGAGTTCGCTTAAGTGCTTTTCCAAAATGCAGAGGGTTGGATTTAAATGTGACAGGTTCAGCTTGATTAATGCCCTCTCTGCTTGTTCTCTCGAGTGTTATGAACGAAGTGGAAAGGAGATTCACTGTCAAGCGTTTAGAACGGGGTTTGAAGAAGACGTAATGGTTCAAACGACTCTTGTCGATATGTATGCGAAATGTTGTAGAATCAACTATGCGGAGAGGGTATTCGAAAGAATTTCTCGAAGAAGTGTTGCCACTTGGAATGCAATGATTGGAGGGTATGGATCGAATAATTGCATCTCATCACCATTAGCTTGCTTAAAAAGTATGCAAGAAACTGACAGATTGAAACCGGACGGGATAACGATGATAAATATTCTTCCTTCTTTCGCACAGGTCGGAACTCTTTTGGAAGGAAAAGCTATTCATGGGTATTCAATTCGACAAGGATTTCTCCCAAATTTAGTATTGGAAACAGCTCTTCTTACAATGTATGGAGAGTGTGGTAAATTGAATTCAGCAGTGGATCTGTTCGATCAAATGGCCGAGAAAAATCTTGCATCGCGGAATTCTTTAGTAGCTGCTTATGTACGGCATGGCCAGAGCCGGGAAGCCTTAGATTTCTTCAAAAATCTCGTGACTAAACCTCTTGAAATCGATGCAGTAACAATTGCAAGCATCTTACCTGCCTATGCTGAATTAGGATCATTGAGGAAGGGGCTAGAAATTCATGGGTATATTGTGAAATTGAAGCACTACTCAAATACTTTCGTCTCGAATTCTATGATCTACATGTATGCTAAATGCGGAGATTTATTCTCGGCTCTGAGGATTTTCGATAATATGTCATTTAAGGATGTTATATCATGGAACACAATCGTTATGGCTTATGGAATTCACGGGTTCGGGGCTAAGTCGATCAAACTATTTGAGGAGATGAAGAAAATGGGCGTCAAACCCAATGAAAGCACCTTCGTTTCGCTACTTTCGTCATGTGCCATTTCTGGTTTGGATGATATGGGTTGGAAGTTCTTCAATTCGATGAAAAATGACTATAAAATAAATCCCGGAATAGAGCATTACAGCTGTATGCTAGATCTCATTGGCCGGAGCGGTGACTTTGACCGAGCCAAGGCGTTTATCGAAGAAATGCAGATAGCCCCTACAGCTCGGATATGGGGATCATTACTTACGGCTAGCAGAAACCATAAAAACATCGAATTTGCTGAATATTCGGCCAAGAAGATTCTGTCCTTCGGCCATGATAATACTGGATGTTATATCTTGCTGGCTAATATGTATGCTGAAGCAGGAAGATGGGAAGATGTGAAAAGGATCAAAACTCTCATGAACAAACAAGGATTGCAGAAAACAGTTGGATTCAGCTCGGTTGAGATAAAATCCAAGTCTCACAGATTTTTCAACCGCGATCGATCTCATGGAGATTCAAACATGATTTACGACGTTCTCGACCTACTTTTGCAAAAAACAGAGGACAAGTTCGTTCATGATTTGGCCAAGTTTAGAATGGTAGAGTTGGATAAGCATAAATCGAACAGTCCCGAGACACATAGCGTGAGATTGGCGATATGCTACGGGCTGATCTCCTCGGAGATTGGAAAACCCGTGATTGTCAAGAAGAACACTGAGAATATGCGAGGATTGTCATGCCGCTTGTAA 2313 41.12 MAAAFTHYFSYNSVVPRNSVEKRVAGLGPENLDIDTNPRFCKSNPTSFRKKFSNNSWAESQNFLLKRTICDFMDSGRIESALHLFERLSQLDIYICNVLIRGLTDQGMFKEAINIYYRMNFQGIGTDKYTYPFLIKSIGGLLSFEEGQKVHAKLFKVGLELDVYICNSLLFMYAKLGFIELAERVFQEMPLKDLVSWNSMTSGYVSAMDGLSSLKCFSKMQRVGFKCDRFSLINALSACSLECYERSGKEIHCQAFRTGFEEDVMVQTTLVDMYAKCCRINYAERVFERISRRSVATWNAMIGGYGSNNCISSPLACLKSMQETDRLKPDGITMINILPSFAQVGTLLEGKAIHGYSIRQGFLPNLVLETALLTMYGECGKLNSAVDLFDQMAEKNLASRNSLVAAYVRHGQSREALDFFKNLVTKPLEIDAVTIASILPAYAELGSLRKGLEIHGYIVKLKHYSNTFVSNSMIYMYAKCGDLFSALRIFDNMSFKDVISWNTIVMAYGIHGFGAKSIKLFEEMKKMGVKPNESTFVSLLSSCAISGLDDMGWKFFNSMKNDYKINPGIEHYSCMLDLIGRSGDFDRAKAFIEEMQIAPTARIWGSLLTASRNHKNIEFAEYSAKKILSFGHDNTGCYILLANMYAEAGRWEDVKRIKTLMNKQGLQKTVGFSSVEIKSKSHRFFNRDRSHGDSNMIYDVLDLLLQKTEDKFVHDLAKFRMVELDKHKSNSPETHSVRLAICYGLISSEIGKPVIVKKNTENMRGLSCRL 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38506790 38509102 + Bma027914.1 Bma08g00609 87436

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00609 770 Gene3D Tetratricopeptide repeat domain 53 143 IPR011990 GO:0005515
Bma08g00609 770 Gene3D Tetratricopeptide repeat domain 251 352 IPR011990 GO:0005515
Bma08g00609 770 Gene3D Tetratricopeptide repeat domain 144 250 IPR011990 GO:0005515
Bma08g00609 770 Gene3D Tetratricopeptide repeat domain 353 456 IPR011990 GO:0005515
Bma08g00609 770 Pfam E motif 614 676 IPR046848 -
Bma08g00609 770 Pfam PPR repeat family 496 544 IPR002885 -
Bma08g00609 770 PANTHER BNAANNG11600D PROTEIN 70 760 - -
Bma08g00609 770 TIGRFAM PPR: pentatricopeptide repeat domain 164 192 IPR002885 -
Bma08g00609 770 TIGRFAM PPR: pentatricopeptide repeat domain 94 124 IPR002885 -
Bma08g00609 770 TIGRFAM PPR: pentatricopeptide repeat domain 499 533 IPR002885 -
Bma08g00609 770 Gene3D Tetratricopeptide repeat domain 471 671 IPR011990 GO:0005515
Bma08g00609 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 162 196 IPR002885 -
Bma08g00609 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 126 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 297 323 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 571 596 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 165 191 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 195 225 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 401 424 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 95 123 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 471 494 IPR002885 -
Bma08g00609 770 Pfam PPR repeat 370 396 IPR002885 -
Bma08g00609 770 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 70 760 - -
Bma08g00609 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 365 399 IPR002885 -
Bma08g00609 770 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 531 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00609 - - - qsu:111992053 899.812
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00609 Bma-Chr8:38506790 Bma09g00910 Bma-Chr9:48483388 5.26E-24 dispersed
Bma02g00439 Bma-Chr2:6643471 Bma08g00609 Bma-Chr8:38506790 8.19E-60 transposed
Bma08g00609 Bma-Chr8:38506790 Bma09g00219 Bma-Chr9:9460346 5.42E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g208 . . . . . Bpe12g00131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo13g00495 Bda15g01022 . . . . Bma08g00609 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0017223 1 0 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00609 Bma_Chr08 FPKM 23.857725 25.024807 12.418926 12.702195 2.023099 1.628204 2.491621 10.363948 9.53409 11.217822