Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bma08g00611 | GTAAACTCTCTGACTGCCTGTTTCCGGTCTCGGTCGGATGGAATAGTCGGTCCGGTAGCCGGATTCAGACAGGAAGGGCTGCTTTGGTACAAAGACATCGGACATCATCTGAACGGTGAGTTTTCAATGGCTGTAGTTCAAGCCAACAATTTACTCGAGGATCAGAGCCAGGTTGAGTCAGGAAGCTTGAGCTCTAATGATTCTGATCCGTATGGTGTATTTGTCGGCGTATACGACGGCCATGGAGGACCCGAGGCTTCCCGCTATCTAACCGATCACCTCTTACAACATCTCAAAAGGTTTGCTTCTGAGAGCCGCTCCATGTCTGTTGACGTAATTCGCAAGGCAATTCAAGCAACCGAGGAGGGTTTTACAGCTCTGGTCGCAGAACAATGGCCGATGAAACCGCGAATGGCAGCTGTTGGATCTTGCTGTCTCGTCGGGGTCATGTGCAGCGAATATCTTTACATCGCCAACCTCGGCGATTCTCGTGCTGTTTTGGGACGAGTTGTGAAAGCGACGGGGGAGGTTCTGTCGATTCAATTGTCAGCCGAGCACAATGCGAGTATAGAGTCTGTGAGACAAGAGCTGCAATCTTTGCATCCTGATGACTCGGAAATTGTCGTCTTGAAGCATAACGTTTGGCGCGTTAAGGGCCTCATTCAGATTTCTCGTTCTATTGGCGATGTGTATCTAAAAAACCCCAAGTTCAATTGCAAATCGTTCAATAAGCCGATTTTGAGCTCAGAACCTTCCATTTCCGTGGTTCGGTTGCAAGCAGACGATGTTGACGATCGATTTATTATATTTGCATCGGACGGCCTCTGGGAACACTTGACCAATCAGGAAGCAGTTGATATTGTTAAGAAACAACCACATAGTGGAAGTGCAAGGAGAGTGGTGAGAGCTGCTCTGCAAGAAGCAGCAAAGAAGAGAGAAATGAGATATTCCGACTTGAAGAAGATTGATAGAGGGGTCCGGAGGCTTTTCCACGATGATATCACGGTGATTATCGTATTTCTCGACTCCGACCTGATTTCCCGGGCGTGCTCGGCAAAGGGCCCGACTATGTCGGCTAGAGGAGGTGGTCATCTCCCTCATAACACCTTGGCTCTGGTATCTGGTGGCACC | 1131 | 49.07 | VNSLTACFRSRSDGIVGPVAGFRQEGLLWYKDIGHHLNGEFSMAVVQANNLLEDQSQVESGSLSSNDSDPYGVFVGVYDGHGGPEASRYLTDHLLQHLKRFASESRSMSVDVIRKAIQATEEGFTALVAEQWPMKPRMAAVGSCCLVGVMCSEYLYIANLGDSRAVLGRVVKATGEVLSIQLSAEHNASIESVRQELQSLHPDDSEIVVLKHNVWRVKGLIQISRSIGDVYLKNPKFNCKSFNKPILSSEPSISVVRLQADDVDDRFIIFASDGLWEHLTNQEAVDIVKKQPHSGSARRVVRAALQEAAKKREMRYSDLKKIDRGVRRLFHDDITVIIVFLDSDLISRACSAKGPTMSARGGGHLPHNTLALVSGGT | 377 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 38538594 | 38544981 | - | Bma031452 | Bma08g00611 | 87438 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bma08g00611 | 377 | Pfam | Protein phosphatase 2C | 61 | 311 | IPR001932 | - | |
| Bma08g00611 | 377 | SMART | PP2C_4 | 32 | 339 | IPR001932 | - | |
| Bma08g00611 | 377 | CDD | PP2Cc | 41 | 341 | IPR001932 | - | |
| Bma08g00611 | 377 | ProSiteProfiles | PPM-type phosphatase domain profile. | 40 | 341 | IPR001932 | - | |
| Bma08g00611 | 377 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN | 4 | 364 | - | - | |
| Bma08g00611 | 377 | SUPERFAMILY | PP2C-like | 49 | 342 | IPR036457 | - | |
| Bma08g00611 | 377 | Gene3D | - | 31 | 351 | IPR036457 | - | |
| Bma08g00611 | 377 | ProSitePatterns | PPM-type phosphatase domain signature. | 74 | 82 | IPR000222 | GO:0043169 | |
| Bma08g00611 | 377 | PANTHER | ALPHABET, ISOFORM E-RELATED | 4 | 364 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bma08g00611 | Bma12g00917 | CCT | |
| Bma03g00616 | Bma08g00611 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bma03g00616 | Bma-Chr3:5088697 | Bma08g00611 | Bma-Chr8:38538594 | 0 | dispersed | |
| Bma08g00611 | Bma-Chr8:38538594 | Bma12g00917 | Bma-Chr12:40612620 | 0 | dispersed | |
| Bma08g00611 | Bma-Chr8:38538594 | Bma08g00745 | Bma-Chr8:43881409 | 0 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bma08g00611 | - | K01102 | nnu:104603663 | 551.592 |