Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00613 ATGACGCAAGATGTTGAGATGAAGGAAAGTGGAGCTCCTTCAAATTCTGCTTCCTCCGCTTCTCTTTCAACTTTACAACATTTGAAAGAGATTGCATCACTCATCGAGACTGGTGCCTATGCCCGGGAAGTTCGTAGAATTGTGCGAGCTGTACGGCTTACTATGGCATTGAGGCGGAAGTTAAAGGTGCCTGTGCTCTCTGCCTTCCTTACTTTTGCCCTCACTCCGGGTTCCGAGGTGCACACTAGGCTGTCTTCCTATCTTCCAAAGGAAGATGAGCAAGACATGGATGTTGATACCGCAACATCTGCAACTCATGTTTCTGCAAAGCACCCTTTACCGGAGCTTGAGATATACTCCTATTTGGCTGTGCTAATATTTTTGATTGATCAGAAGAGGTATAATGAGGCCAAGTCTTGTGCTTCAGCAAGCATTGTTCGACTGAAGAACCTGAATAGGAGAACCGTTGATGTGTTAGCATCCAGGCTCTATTTCTACTATTCACTTAGCTATGAGCTCACTGGTGATCTTGCAGAAATAAGGGGTAACCTCCTTGGCCTGCATCGAATTGCAACATTGCGCCATGATGAGTTGGGCCAGGAAACTCTTCTAAACCTACTTCTGCGCAATTATCTGCATTACAATCTATACGATCAGGCTGAGAAGCTAAGATCCAAGGCTCCCCGTTTTGAAGCTCACTCAAATCAACAGTTCTGTCGATATCTGTTTTATTTGGGAAAGATTCGGACAATTCAACTGGAGTATACAGATGCGAAAGAGTCCCTTTTGCAGGCTGCCCGGAAAGCCCCTGCTTCAGCCCTTGGATTCCGAGTTCAATGCAACAAATGGGCCATCATTGTTCGCCTACTGCTTGGAGAAATCCCTGAGAGAACAGTTTTCATGCAGAAACACATGGAGAAGGCTTTGAAACCATATTTTGAACTTACAAATGCTGTGAGAATTGGTGATTTGGAGCTTTTTAGAACTGTTGCTGAGAAGTTCTCGAGTACTTTCACCTCAGATCGTACCAATAATCTAATTGTTAGGCTGCGGCATAATGTCATTAGGACTGGGCTCCGCAACATAAGCATTTCTTATTCCCGTATCTCATTAACTGATGTTGCAAAAAAACTGCGATTGGACTCTGCAAATCCAGTTGCTGATGCCGAAAGTATCGTGGCCAAGGCCATTCGCGATGGGGCAATAGATGCTACACTGGACCATGCGGAAGGATGCATGGTATCAAAGGAAACTGGGGACATCTACTCCACAAATGAGCCTCAAGCTGCTTTCAACTTGAGAATTTCATTTTGTCTCAATATGCACAACGAGGCAGTGAGAGCCCTTTGCTTTCCACCAAACTCCCACAAAGAGAAGGAAAGTGCAGAGAAAAGGAGGGAGAGGCAGCAGCAGGAGCAAGAGCTTGCAAAGCACATAGCTGAGGAGGATGATGATGATTTTTGA 1464 45.22 MTQDVEMKESGAPSNSASSASLSTLQHLKEIASLIETGAYAREVRRIVRAVRLTMALRRKLKVPVLSAFLTFALTPGSEVHTRLSSYLPKEDEQDMDVDTATSATHVSAKHPLPELEIYSYLAVLIFLIDQKRYNEAKSCASASIVRLKNLNRRTVDVLASRLYFYYSLSYELTGDLAEIRGNLLGLHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPASALGFRVQCNKWAIIVRLLLGEIPERTVFMQKHMEKALKPYFELTNAVRIGDLELFRTVAEKFSSTFTSDRTNNLIVRLRHNVIRTGLRNISISYSRISLTDVAKKLRLDSANPVADAESIVAKAIRDGAIDATLDHAEGCMVSKETGDIYSTNEPQAAFNLRISFCLNMHNEAVRALCFPPNSHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 487
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38581482 38584504 + Bma027919.1 Bma08g00613 87440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00613 487 SMART PINT_4 345 438 IPR000717 -
Bma08g00613 487 Coils Coil 454 481 - -
Bma08g00613 487 Gene3D - 244 432 - -
Bma08g00613 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Bma08g00613 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Bma08g00613 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 - -
Bma08g00613 487 Pfam PCI domain 311 416 IPR000717 -
Bma08g00613 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 1 487 - -
Bma08g00613 487 SUPERFAMILY Winged helix DNA-binding domain 347 421 IPR036390 -
Bma08g00613 487 MobiDBLite consensus disorder prediction 452 487 - -
Bma08g00613 487 MobiDBLite consensus disorder prediction 453 480 - -
Bma08g00613 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3-RELATED 1 487 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00613 K03033 PSMD3, RPN3; 26S proteasome regulatory subunit N3 - cpap:110818950 808.135
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00613 Bma-Chr8:38581482 Bma08g00747 Bma-Chr8:43899732 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g179 . . . . . Bpe12g00127 . . Cmo19g00757 Cmo11g01750 . . . . . Cpe04g00602 Cpe15g00601 Bhi05g01695 Tan02g0667 . . Hepe02g0415 . . Cla02g00415 Cam02g0425 Cec02g0423 Cco02g0441 Clacu02g0426 Cmu02g0421 Cre02g0755 . . . . . Csa07g00112 . Cme01g01250 . Blo13g00498 Bda15g01028 . . . . Bma08g00613 . . . Cma11g01368 . . Car19g00576 . . . . . . . . . . . . . . . . . . Chy01g00671 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002082 2 4 1 2 1 1 4 1 1 2 1 1 3 2 2 4 1 2 4 1 2 2 2 2 2 0 2 5 6 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00613 Bma_Chr08 FPKM 33.047249 35.804802 24.54668 21.050043 6.351189 5.268573 4.664701 5.399672 4.269708 4.279999