Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00616 ATGGATTTTGAGCTGAGACGAGCGAGGGAGAAACTGGAGAAAGAGCAGAAAGAGAGGAAGGCGATGGCCAAGCTGAAATTGGGGAGGGAGAGGAACGCTAAAGAGGAGGCTAGGAAGCTAAGAGAAGCTATTGAGGAGGCTCAGAGATCGAGACGCCTCGACGCTGCCGATGCCCAAACCAAGGTTGATCAGTTAATGGATGAAAGTCTTCTTGCTGGAAGAGGAATCATCTTTTCCCGTATATTAGAAGCAGTACCTTTTCAGGGTCTTGGAGACAAGATCAAACTGCCACCTTCTTGTTTCACTGAATTGTCTGATCAAGGTGCATTTGATAAGGGACCTGTGTACTTTCAACTTTCAATAGTTCATCAACCTTGTCCTTCAGGCACAAAGGTCGCTGGTGAAGAGAATTATAAAACCACCCATTCAGGTGTTTTAGAGTTCACTGCCGATGAAGGCTCTGTGGAGCTACCTCCTCATGTATGGCAAAATTTATTTTCAGAAGGGTTCTCAAAGACTTCATTAATTGAAGTTCGTTATGTTTGGATGCCAAAGGGCTCTTATGCAAAGCTTCAACCAGATGGATTAGGCTTTTCAGACTTACCCAATCACAAAGCTATACTTGAAACTAGCCTTCGACAGCATGCTACCCTTTCACAAGGTGATGTGCTGGTGGTTAGTTATGGGGACGTATCATATAAGTTACATGTTCTAGACTTGAAGCCTTCTTCTAGTGTATCTGTTTTAGAAACAGATATCGAGGTTGATATTGTTGGTCCTAGTTCTTCTTCAGAATCAATGGATCGACATGTTCTCAAACAGCTGACTTTTGAAAAACCAGAATCTGGAATGGTTGAAGAAGGACATTATTCATATTACAAGCTGTCAATAGACGATGAGACATGGAGTAAAGTTGCTTCTGAAGATTCTAGAGTTGAAGTAAAGCTGGATTTGGAAATGAATGGTGGAGACAATGATATCTATATCGGGAAGCATCCTCTTCTATTTCCTACACGGCACCAACATGAATGGTCTTCCCATGATGTTGGTTCAAAGGTTTTGATTCTTAGCTCTAAAGACAAAAACTTTGGACCTGGTACTTACAGCATTGGTGTCTATGGTTTCCATAACACAACCAAATATCAGATCTCGGTATGTGTCAACAATGACATGAACCTTAAAGCAGTTGAACATGCAGGTCACTCATCATCGACCATGGAGATGGATACTGTAGAATGCCGGAATTGCAAGCATTACATACCTAGTCGAACTATAGCCCTGCATGAAGCCTACTGCAGTAGACATAATCTTGTCTGCCATCATCCTGGTTGTGGTGTCGTTCTTAGGGTCAACGAAGCCAAGAACCATGTACACTGTGATAAATGTGGACAAGCTTTTCAGCAGAGTGAAATAGAGAAGCACAAGAAAGTGTTCCATGAGCCCCTCCAATGTTCCTGCGGAACAGTTCTTGAGAAAGAAGAGATGGTACAACACCAAGCCTTGTCTTGTCCATTGCGCCTCGTTGCGTGCCGCTTCTGTGGGGACATGGTTCAAGCAGGGGGCTCAGCCTTAGACATCCGTGACCGATTAAGAGGACTTTCGGAACATGAAAGCGTCTGTGGTTCGAGGACAGCCCCCTGTGATTCGTGTGGACGGTCTGTGATGTTGAAAGATATGGATATTCATCAAGTAGCTGTTCACCAAAAGAGTTAG 1713 43.67 MDFELRRAREKLEKEQKERKAMAKLKLGRERNAKEEARKLREAIEEAQRSRRLDAADAQTKVDQLMDESLLAGRGIIFSRILEAVPFQGLGDKIKLPPSCFTELSDQGAFDKGPVYFQLSIVHQPCPSGTKVAGEENYKTTHSGVLEFTADEGSVELPPHVWQNLFSEGFSKTSLIEVRYVWMPKGSYAKLQPDGLGFSDLPNHKAILETSLRQHATLSQGDVLVVSYGDVSYKLHVLDLKPSSSVSVLETDIEVDIVGPSSSSESMDRHVLKQLTFEKPESGMVEEGHYSYYKLSIDDETWSKVASEDSRVEVKLDLEMNGGDNDIYIGKHPLLFPTRHQHEWSSHDVGSKVLILSSKDKNFGPGTYSIGVYGFHNTTKYQISVCVNNDMNLKAVEHAGHSSSTMEMDTVECRNCKHYIPSRTIALHEAYCSRHNLVCHHPGCGVVLRVNEAKNHVHCDKCGQAFQQSEIEKHKKVFHEPLQCSCGTVLEKEEMVQHQALSCPLRLVACRFCGDMVQAGGSALDIRDRLRGLSEHESVCGSRTAPCDSCGRSVMLKDMDIHQVAVHQKS 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 38648055 38651066 + Bma027922.1 Bma08g00616 87443

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00616 570 Pfam Ubiquitin fusion degradation protein UFD1 91 260 IPR004854 GO:0006511
Bma08g00616 570 Gene3D - 185 258 - -
Bma08g00616 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 478 526 IPR013083 -
Bma08g00616 570 Coils Coil 5 25 - -
Bma08g00616 570 PANTHER UBIQUITIN FUSION DEGRADATION UFD1 FAMILY PROTEIN 1 569 - -
Bma08g00616 570 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 569 IPR004854 GO:0006511
Bma08g00616 570 Coils Coil 27 53 - -
Bma08g00616 570 Gene3D - 82 183 IPR042299 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00616 - - - jre:108983016 893.264
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00599 Bma08g00616 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02578 Bma-Chr1:83416149 Bma08g00616 Bma-Chr8:38648055 3.57E-12 dispersed
Bma04g00425 Bma-Chr4:3433940 Bma08g00616 Bma-Chr8:38648055 7.28E-14 dispersed
Bma08g00616 Bma-Chr8:38648055 Bma10g01172 Bma-Chr10:41235112 6.60E-29 dispersed
Bma08g00616 Bma-Chr8:38648055 Bma08g00649 Bma-Chr8:40719555 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010227 1 2 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00616 Bma_Chr08 FPKM 1.2473 2.422589 3.499588 3.272792 4.138852 4.734496 4.315188 3.573857 3.813233 3.64833