Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00624 ATGGTGGGTGACGGCGGAGGAGGAGGAGGAAAAAACGAGGGAAGAGGAGTGGGTGAGGGAATGAAAGGGCTGAAGAAGGGACCGTGGACGGCGGCGGAGGATACGATTTTGATGGAGTACGTGAAGAAACACGGGGAAGGAAACTGGAATGCAGTGCAAAAAAACACAGGGTTGGCTAGATGTGGGAAGAGTTGCAGGCTGAGATGGGCTAACCATTTGCGGCCTAATCTCAAGAAGGGTTCTTTCTCTGCCGATGAAGAGAGAGTCATCATCGAACTTCACGCTAAGCTCGGCAACAAATGGGCTCGCATGGCTGCTCAGCTGCCTGGTAGAACTGATAATGAAATAAAGAACTACTGGAATACGAGGATGAAGAGACGACAGAGAGCTGGCTTGCCTCTTTACCCGCTCGAACTTCAAAAAGAAGTTGCTGCAATTCATCTCCAACACCATAGCGAAACCTATTATTCTTCTCCTCCCTTCTCTTCTGTTCTCTCTCCTCCTCAACCTCCAAAATTTAATTTCAATCGCTCCCTCTCTCTCTTCAACCCCATGAGTTTCTCATTAGCTGTGAATTCTCTGTCGTCAAACCAGCACGATTCTGCGTTTTTCTCCACACCTACCTCCCAATTTAAACTTCTCAGTGAGAACAATGGCGCTTCTGGTTTTTCTGTTCCTATATCTTCTGCCTTTGTGCCTGTTTCCTCCTCCGTTTTTACTCAGAGACTCCAGACGCAACCACTTTCTCCGCAGGCATTGAATTTGAGTTACGGAAGAAGTAACTATAACTGTAATTCTGGTTTTAGCTCCATCATCCTTGGTTCTTCGTTCGAACAAGTGATTCCTGGATTAGAAGCAGAGCTACCTTCAATCCAAACGCCGCCGCTTTCAACGACAACAGCCTCATCGGGAGCCATCGTCAGTGACTGCGAAATGAACACACAAACATCGCAGGCAAATAGCGGGTTGCTTGATGCTCTATTAATAGAGGCTCAAGCTATGGCTCGAAATGAGAGAGTAAAAGACTACGGGTCTTCCTCAGCCGTGTCAGAAAAAGAAAAACACTTTGGAGAAGAAGACGACGTCGAAAACCACTGCGATGAATTGAGCTCTTCTCAGTCATCAACCGGGGTGAAAACGATGGAGGGTCAAATGGACGAGACAGAATCGGTGGACGAAGACTTGATGAGTCTTCTCAACAATTTTCCCTCCACAATGCCACAGTCATTGCCGGAATGGTACCCGAGTATCCGTAGCAACGCAGACAACGCCCAGGGGTCTTATCTTCCTGCCGCAAGTCTGGCGCTCGATATGCGGCAAAATGCTGATTCACCAGCGCCAATCGCATCTCCGACGGCTTGCTGGAACAACAGGCCCCGCAACACCCAATAG 1392 48.49 MVGDGGGGGGKNEGRGVGEGMKGLKKGPWTAAEDTILMEYVKKHGEGNWNAVQKNTGLARCGKSCRLRWANHLRPNLKKGSFSADEERVIIELHAKLGNKWARMAAQLPGRTDNEIKNYWNTRMKRRQRAGLPLYPLELQKEVAAIHLQHHSETYYSSPPFSSVLSPPQPPKFNFNRSLSLFNPMSFSLAVNSLSSNQHDSAFFSTPTSQFKLLSENNGASGFSVPISSAFVPVSSSVFTQRLQTQPLSPQALNLSYGRSNYNCNSGFSSIILGSSFEQVIPGLEAELPSIQTPPLSTTTASSGAIVSDCEMNTQTSQANSGLLDALLIEAQAMARNERVKDYGSSSAVSEKEKHFGEEDDVENHCDELSSSQSSTGVKTMEGQMDETESVDEDLMSLLNNFPSTMPQSLPEWYPSIRSNADNAQGSYLPAASLALDMRQNADSPAPIASPTACWNNRPRNTQ 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39174983 39176661 - Bma027940.2 Bma08g00624 87451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00624 463 Pfam Myb-like DNA-binding domain 79 122 IPR001005 -
Bma08g00624 463 Pfam Myb-like DNA-binding domain 26 73 IPR001005 -
Bma08g00624 463 MobiDBLite consensus disorder prediction 442 463 - -
Bma08g00624 463 MobiDBLite consensus disorder prediction 445 463 - -
Bma08g00624 463 CDD SANT 81 122 IPR001005 -
Bma08g00624 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 73 IPR017930 -
Bma08g00624 463 CDD SANT 28 73 IPR001005 -
Bma08g00624 463 Gene3D - 81 152 - -
Bma08g00624 463 MobiDBLite consensus disorder prediction 342 380 - -
Bma08g00624 463 Gene3D - 25 78 - -
Bma08g00624 463 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 15 438 - -
Bma08g00624 463 MobiDBLite consensus disorder prediction 345 362 - -
Bma08g00624 463 ProSiteProfiles Myb-like domain profile. 21 73 IPR001005 -
Bma08g00624 463 MobiDBLite consensus disorder prediction 1 26 - -
Bma08g00624 463 ProSiteProfiles Myb-like domain profile. 74 124 IPR001005 -
Bma08g00624 463 SUPERFAMILY Homeodomain-like 23 120 IPR009057 -
Bma08g00624 463 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 74 128 IPR017930 -
Bma08g00624 463 SMART sant 25 75 IPR001005 -
Bma08g00624 463 SMART sant 78 126 IPR001005 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma02g01348 Bma08g00624 CCT
Bma02g01348 Bma08g00624 ECH
Bma03g01315 Bma08g00624 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00668 Bma-Chr4:6417184 Bma08g00624 Bma-Chr8:39174983 2.77E-24 dispersed
Bma08g00624 Bma-Chr8:39174983 Bma10g00552 Bma-Chr10:6671703 1.09E-67 dispersed
Bma08g00638 Bma-Chr8:40361753 Bma08g00624 Bma-Chr8:39174983 4.02E-43 dispersed
Bma03g00021 Bma-Chr3:260327 Bma08g00624 Bma-Chr8:39174983 1.58E-70 transposed
Bma06g01374 Bma-Chr6:50558531 Bma08g00624 Bma-Chr8:39174983 5.02E-42 transposed
Bma08g01188 Bma-Chr8:50771601 Bma08g00624 Bma-Chr8:39174983 4.91E-68 transposed
Bma08g00624 Bma-Chr8:39174983 Bma08g00635 Bma-Chr8:40210701 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57750 PF00249 Myb_DNA-binding 4.00E-14 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00624 K09422 - csv:101204619 413.69