Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00642 | ATGGAATGGACTAGAGGCAAAGTCATCGGCCAGGGCTCATCGGCCACCGTCTCTCTTGCCACCTCTCGCCGGACGGGTCAAGTTTTTGCTGTGAAAACGGCAGAGCTGGGTGTTTCCCAATTCTTACAAACGGAGCAGGAAATTCTCTCGTCTTTGAGCCATCCGAGTGTGGTTGGGTACCGAGGGTGGGATTTTACTAGGGAGAACGGAAAGCTTTTTTACAATCTGTTTATGGAGTTGGCGCCGGAGGGAACGCTCGCCGATGAAATTCACCGGCGAGGTGATGTACTAAACGAGTCTATGATCGGATTTTTCACTTGGCAAATATTGCAGGGGCTGGAGTATTTACACTCACGATGCTTGGTGCATTGCGATATCAAGAGTCGCAATATCTTGATTTGTGATGGTGGGGCGAAAATTGCAGATTTTGGCTCCTCAAAGAGGGCGGAGGAGGCGGCTGTGCGAGGCGGAACACCTATGTTCATGGCGCCGGAGGTGGTGCGGAGGGAGGGGCAGGGGCGGGAAAGTGACATCTGGGGTCTCGGATGTACAGTAATAGAAATGGCCACCGGAGGTTCGCCGTGGCCTTGTATTAAAGATAGCCCATTATCAGTTCTTTACCGAGTTGGATATTCCGGCGAGTCGCCGGCGGTTCCGAGCATTTTATCCGACCAGGGGAAGGATTTTTTGGAGAAGTGCTTGAGGAAGAATCCGAAGAAAAGGTGGACAGCTGGGCAACTTCTCAGACACTCTTTTCTTAAAGAATTCAGCTCCGGCGAAAATCGATTTCAGAAATCTTATTCTATCTCTCCGACGAGTACTTTAGAACAGAGCATTTGGAGGTCATCGGAAGAGTTCGAAAATCACAGTGATGTTGCCGATGATAGGATCAGACGACTGTCGTTGTTTTCAAGGGAGCCCAAATGGAAGGGAGACGAGAATTGGATCGGAGTCAGGGGAGAAGAAGACTTGGAGGAGGAGTTATCGTGTTCTGAATTCTCAGAAAATAACAATCTCGGTGTCAATTATTCGGCAAACAGTAGATTTTTAGAAGATTACGCAGTAATTAGTAAACAAAGTTGTAAGAAAGGCATAGCCAAATCATCAGTTTCTTCAAATTCAAGCTTTTTATGA | 1134 | 47.88 | MEWTRGKVIGQGSSATVSLATSRRTGQVFAVKTAELGVSQFLQTEQEILSSLSHPSVVGYRGWDFTRENGKLFYNLFMELAPEGTLADEIHRRGDVLNESMIGFFTWQILQGLEYLHSRCLVHCDIKSRNILICDGGAKIADFGSSKRAEEAAVRGGTPMFMAPEVVRREGQGRESDIWGLGCTVIEMATGGSPWPCIKDSPLSVLYRVGYSGESPAVPSILSDQGKDFLEKCLRKNPKKRWTAGQLLRHSFLKEFSSGENRFQKSYSISPTSTLEQSIWRSSEEFENHSDVADDRIRRLSLFSREPKWKGDENWIGVRGEEDLEEELSCSEFSENNNLGVNYSANSRFLEDYAVISKQSCKKGIAKSSVSSNSSFL | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 40560372 | 40561505 | - | Bma027973.1 | Bma08g00642 | 87469 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00642 | 377 | CDD | STKc_MAPKKK | 2 | 253 | - | - | |
Bma08g00642 | 377 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 283 | IPR011009 | - | |
Bma08g00642 | 377 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 1 | 334 | - | - | |
Bma08g00642 | 377 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 32 | IPR017441 | GO:0005524 | |
Bma08g00642 | 377 | PANTHER | MAP KINASE KINASE KINASE | 1 | 334 | - | - | |
Bma08g00642 | 377 | Gene3D | Transferase(Phosphotransferase) domain 1 | 88 | 306 | - | - | |
Bma08g00642 | 377 | Pfam | Protein kinase domain | 4 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma08g00642 | 377 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 87 | - | - | |
Bma08g00642 | 377 | ProSiteProfiles | Protein kinase domain profile. | 3 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Bma08g00642 | 377 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 121 | 133 | IPR008271 | GO:0004672|GO:0006468 | |
Bma08g00642 | 377 | SMART | serkin_6 | 3 | 253 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00642 | Bma-Chr8:40560372 | Bma14g00331 | Bma-Chr14:4125550 | 2.83E-93 | dispersed | |
Bma06g00396 | Bma-Chr6:12952037 | Bma08g00642 | Bma-Chr8:40560372 | 7.98E-56 | transposed | |
Bma09g00876 | Bma-Chr9:47889666 | Bma08g00642 | Bma-Chr8:40560372 | 5.77E-51 | transposed | |
Bma13g00651 | Bma-Chr13:16074561 | Bma08g00642 | Bma-Chr8:40560372 | 1.32E-53 | transposed | |
Bma12g00815 | Bma-Chr12:37793360 | Bma08g00642 | Bma-Chr8:40560372 | 7.88E-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
66666 | PF00069 | Pkinase | 1.60E-56 | CL0016 | Bma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00642 | K20716 | - | cit:102628791 | 376.711 |