Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00642 ATGGAATGGACTAGAGGCAAAGTCATCGGCCAGGGCTCATCGGCCACCGTCTCTCTTGCCACCTCTCGCCGGACGGGTCAAGTTTTTGCTGTGAAAACGGCAGAGCTGGGTGTTTCCCAATTCTTACAAACGGAGCAGGAAATTCTCTCGTCTTTGAGCCATCCGAGTGTGGTTGGGTACCGAGGGTGGGATTTTACTAGGGAGAACGGAAAGCTTTTTTACAATCTGTTTATGGAGTTGGCGCCGGAGGGAACGCTCGCCGATGAAATTCACCGGCGAGGTGATGTACTAAACGAGTCTATGATCGGATTTTTCACTTGGCAAATATTGCAGGGGCTGGAGTATTTACACTCACGATGCTTGGTGCATTGCGATATCAAGAGTCGCAATATCTTGATTTGTGATGGTGGGGCGAAAATTGCAGATTTTGGCTCCTCAAAGAGGGCGGAGGAGGCGGCTGTGCGAGGCGGAACACCTATGTTCATGGCGCCGGAGGTGGTGCGGAGGGAGGGGCAGGGGCGGGAAAGTGACATCTGGGGTCTCGGATGTACAGTAATAGAAATGGCCACCGGAGGTTCGCCGTGGCCTTGTATTAAAGATAGCCCATTATCAGTTCTTTACCGAGTTGGATATTCCGGCGAGTCGCCGGCGGTTCCGAGCATTTTATCCGACCAGGGGAAGGATTTTTTGGAGAAGTGCTTGAGGAAGAATCCGAAGAAAAGGTGGACAGCTGGGCAACTTCTCAGACACTCTTTTCTTAAAGAATTCAGCTCCGGCGAAAATCGATTTCAGAAATCTTATTCTATCTCTCCGACGAGTACTTTAGAACAGAGCATTTGGAGGTCATCGGAAGAGTTCGAAAATCACAGTGATGTTGCCGATGATAGGATCAGACGACTGTCGTTGTTTTCAAGGGAGCCCAAATGGAAGGGAGACGAGAATTGGATCGGAGTCAGGGGAGAAGAAGACTTGGAGGAGGAGTTATCGTGTTCTGAATTCTCAGAAAATAACAATCTCGGTGTCAATTATTCGGCAAACAGTAGATTTTTAGAAGATTACGCAGTAATTAGTAAACAAAGTTGTAAGAAAGGCATAGCCAAATCATCAGTTTCTTCAAATTCAAGCTTTTTATGA 1134 47.88 MEWTRGKVIGQGSSATVSLATSRRTGQVFAVKTAELGVSQFLQTEQEILSSLSHPSVVGYRGWDFTRENGKLFYNLFMELAPEGTLADEIHRRGDVLNESMIGFFTWQILQGLEYLHSRCLVHCDIKSRNILICDGGAKIADFGSSKRAEEAAVRGGTPMFMAPEVVRREGQGRESDIWGLGCTVIEMATGGSPWPCIKDSPLSVLYRVGYSGESPAVPSILSDQGKDFLEKCLRKNPKKRWTAGQLLRHSFLKEFSSGENRFQKSYSISPTSTLEQSIWRSSEEFENHSDVADDRIRRLSLFSREPKWKGDENWIGVRGEEDLEEELSCSEFSENNNLGVNYSANSRFLEDYAVISKQSCKKGIAKSSVSSNSSFL 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40560372 40561505 - Bma027973.1 Bma08g00642 87469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00642 377 CDD STKc_MAPKKK 2 253 - -
Bma08g00642 377 SUPERFAMILY Protein kinase-like (PK-like) 3 283 IPR011009 -
Bma08g00642 377 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 334 - -
Bma08g00642 377 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Bma08g00642 377 PANTHER MAP KINASE KINASE KINASE 1 334 - -
Bma08g00642 377 Gene3D Transferase(Phosphotransferase) domain 1 88 306 - -
Bma08g00642 377 Pfam Protein kinase domain 4 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00642 377 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Bma08g00642 377 ProSiteProfiles Protein kinase domain profile. 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00642 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Bma08g00642 377 SMART serkin_6 3 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00642 Bma-Chr8:40560372 Bma14g00331 Bma-Chr14:4125550 2.83E-93 dispersed
Bma06g00396 Bma-Chr6:12952037 Bma08g00642 Bma-Chr8:40560372 7.98E-56 transposed
Bma09g00876 Bma-Chr9:47889666 Bma08g00642 Bma-Chr8:40560372 5.77E-51 transposed
Bma13g00651 Bma-Chr13:16074561 Bma08g00642 Bma-Chr8:40560372 1.32E-53 transposed
Bma12g00815 Bma-Chr12:37793360 Bma08g00642 Bma-Chr8:40560372 7.88E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66666 PF00069 Pkinase 1.60E-56 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00642 K20716 - cit:102628791 376.711