Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00644 ATGGCCAAAGGAAGTGGAGTCTCCATTGATTCATCAGACCCATTTGTCTTCTTCCCCCACGAACCTACTGTTCTCAACTCATTCTCAGAACATCACTGTATCAAAAACTTCGATCCCCCCGACTGCAGAGAACTCCTTTCAATTGATTCCACCCGTTCATCCTCTCCTTCTCCCACCATGAACTTCCCTCCCCCGTCCTCCGACGATAAACGGATGATCGTGGACGAGATGAACTTCTTCGCTGATGACAAACACCCTGATTCCTCCATTGACGCCGACGATAATAAATGCTCAGATATCCGGCGCACTAAGTTGGAGGTCAACGTTAACACTGGTTTGCATCTTCTAACCACTAATACCAGTAGCGATCAATCCATGGTGGACGATGGGGTACCTCCTGTCGCAGAAGATAAGAGATCTAAAAATGAGTTGGTAGTAGTTTTGCAAGCTGTAGAGAGGCTGAACATGGAGAATCAATGTTTAAGAGATATGCTCAATCAAGTAAGCAGCAATTACCAGGCGTTGCAGATGCACTTAGTCAATTTAATGCAGGATAAAAAAACTGAGGAAATTGATAAACACAGTGGAAATGGCGGAACACTGGTTCCGAGGCAATTCATGGATCTTGGTCTGGCTACTAATGCCGATGTCGATGAGCCGTCTCTGTCCTCATCTGAAGCGAATGACTGCCGGTCAGGAACACTGAGAAATAACGTAGAATTTGCATCGGAGGGTCCAGGGATTGAGAGAGAGAGAGAGAAGGAGAATAATCCTGATCCAGTTTCTCAAGAACGGGGAGGAAGCAAGATTTCGAGATTTAATCCTGGTAAAGACGTTGATCAAACTGAGGCAACCATGAGAAAGGCTCGAGTTTCTGTTAGAGCCCGATCTGAGGAGCCCATGATCACAGATGGATGTCAATGGAGGAAATACGGGCAGAAAATGGCGAAGGGAAACCCATGTCCTCGAGCTTATTATCGGTGTACAATGGCCGCCGGCTGTCCGGTTCGAAAACAAGTGCAAAGGTGTGCAGAAGATCGGACGATTCTGATAACAACTTACGAAGGAAATCACAACCATCCATTACCGCCGGCGGCGATGGCGATGGCCTCAACGACATCATCTGCGGCGAGAATGCTACTATCGGGATCGACGTCGAGCGCCGATCATAGTCTGATGAACCCAATTTTTCTGCCAAAAACTCTCCTCCTAGGCTCCTCAAACATGGCTACAATCTCAGCCTCCGCCCCGTTTCCCACTGTTACGCTAGACCTCACTCAAACACCCATCAACCCTTTACAATTCCAAAGGCCACAAAGCCCATTTCAAATCCCTTTTCCTAACCCATCTCCGAATTCCTCAGCCTCTTTCCTTCCTCAAATATTAGGCCAGGAGTTGTACAACCAATCTAAGTTCTCCGGGCTGCAAATGTCGCAAGAGAGCGGCGGGCAGTTGGGTCAGCAAGGCGCGACGGCTGACACGCTCAGCGCTGCCATTGCTGCAGATCCAAACTTCACGGCAGCGCTAGTCGCAGCAATCACTTCTATTGTTGAAGGTGCTCAATCGGTCAAAAACAGCGACATGAATAACAGTAACAGTAGTAATAAAATCAGCAGTTCGAGTTTCTCAGGAAATTGA 1638 47.8 MAKGSGVSIDSSDPFVFFPHEPTVLNSFSEHHCIKNFDPPDCRELLSIDSTRSSSPSPTMNFPPPSSDDKRMIVDEMNFFADDKHPDSSIDADDNKCSDIRRTKLEVNVNTGLHLLTTNTSSDQSMVDDGVPPVAEDKRSKNELVVVLQAVERLNMENQCLRDMLNQVSSNYQALQMHLVNLMQDKKTEEIDKHSGNGGTLVPRQFMDLGLATNADVDEPSLSSSEANDCRSGTLRNNVEFASEGPGIEREREKENNPDPVSQERGGSKISRFNPGKDVDQTEATMRKARVSVRARSEEPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMAMASTTSSAARMLLSGSTSSADHSLMNPIFLPKTLLLGSSNMATISASAPFPTVTLDLTQTPINPLQFQRPQSPFQIPFPNPSPNSSASFLPQILGQELYNQSKFSGLQMSQESGGQLGQQGATADTLSAAIAADPNFTAALVAAITSIVEGAQSVKNSDMNNSNSSNKISSSSFSGN 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40567513 40569516 - Bma027975.1 Bma08g00644 87471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00644 545 ProSiteProfiles WRKY domain profile. 297 363 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma08g00644 545 MobiDBLite consensus disorder prediction 240 280 - -
Bma08g00644 545 Pfam WRKY DNA -binding domain 304 361 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma08g00644 545 MobiDBLite consensus disorder prediction 245 260 - -
Bma08g00644 545 SUPERFAMILY WRKY DNA-binding domain 296 363 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bma08g00644 545 MobiDBLite consensus disorder prediction 524 545 - -
Bma08g00644 545 SMART WRKY_cls 302 362 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bma08g00644 545 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 57 535 IPR044810 GO:0003700
Bma08g00644 545 MobiDBLite consensus disorder prediction 47 68 - -
Bma08g00644 545 PANTHER OS05G0567200 PROTEIN 57 535 - -
Bma08g00644 545 Coils Coil 151 171 - -
Bma08g00644 545 Gene3D WRKY domain 287 364 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00818 Bma08g00644 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00644 Bma-Chr8:40567513 Bma11g00014 Bma-Chr11:405668 7.56E-39 dispersed
Bma03g00818 Bma-Chr3:7586366 Bma08g00644 Bma-Chr8:40567513 1.30E-58 transposed
Bma12g00386 Bma-Chr12:7655896 Bma08g00644 Bma-Chr8:40567513 9.19E-56 transposed
Bma12g00408 Bma-Chr12:9040955 Bma08g00644 Bma-Chr8:40567513 4.17E-18 transposed
Bma12g00813 Bma-Chr12:37749618 Bma08g00644 Bma-Chr8:40567513 1.88E-143 transposed
Bma10g00563 Bma-Chr10:7043915 Bma08g00644 Bma-Chr8:40567513 1.53E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57754 PF03106 WRKY 2.80E-24 CL0274 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00644 - - qsu:112033147 551.592