Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00659 ACAACCATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATAGGAAAAGAGGAAAGAATGAGGCCGATGATGAGAAACGTGAGCTTGTCTTCAAGGAAGATGGGCAGGAGTACGCCCAAGTCCTTAGAATGCTAGGCAATGGCCGGTGCGAGGCTATGTGCATCGATGGGACAAAACGGCTTTGCCATATCAGAGGAAAGATGCATAAGAAGGTTTGGATAGCAGCTGGAGATATCATACTCGTCGGTCTTAGAGATTATCAGGATGACAAGGCTGATGTGATTCTCAAATACATGCCTGATGAGGCAAGACTTCTGAAGGCATATGGTGAGCTACCTGACAGTACACGTCTTAATGAGGGGATTGCCGGAGGCATTGATGACGAAGAAGATGGAGCTGGTGATGACTACATTGAGTTTGAGGATGAAGATATCGATAAGATCTAG 444 46.4 TTMPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLNEGIAGGIDDEEDGAGDDYIEFEDEDIDKI 147
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 41052420 41052863 + Bma027995.1 Bma08g00659 87486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00659 147 Pfam Translation initiation factor 1A / IF-1 34 95 IPR006196 GO:0003723|GO:0003743|GO:0006413
Bma08g00659 147 CDD S1_IF1A 35 111 IPR001253 GO:0003743|GO:0006413
Bma08g00659 147 MobiDBLite consensus disorder prediction 1 26 - -
Bma08g00659 147 Hamap Translation initiation factor 1A [eif1a]. 18 112 IPR001253 GO:0003743|GO:0006413
Bma08g00659 147 SMART eIF1neu4 30 112 IPR001253 GO:0003743|GO:0006413
Bma08g00659 147 ProSitePatterns Eukaryotic initiation factor 1A signature. 43 65 IPR018104 GO:0003743|GO:0006413
Bma08g00659 147 PANTHER EIF-1A 3 147 IPR001253 GO:0003743|GO:0006413
Bma08g00659 147 Gene3D - 4 147 IPR012340 -
Bma08g00659 147 TIGRFAM eIF-1A: translation initiation factor eIF-1A 16 112 IPR001253 GO:0003743|GO:0006413
Bma08g00659 147 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 1A 3 147 - -
Bma08g00659 147 SUPERFAMILY Nucleic acid-binding proteins 4 145 IPR012340 -
Bma08g00659 147 ProSiteProfiles S1 domain IF1 type profile. 24 98 IPR006196 GO:0003723|GO:0003743|GO:0006413
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00659 Bma-Chr8:41052420 Bma12g00837 Bma-Chr12:38663945 3.46E-99 dispersed
Bma12g00845 Bma-Chr12:39196213 Bma08g00659 Bma-Chr8:41052420 7.34E-94 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00659 K03236 - gmx:100777129 238.424