Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00690 ATGGGATATATGTGCGATTTTTGCGGTGATCAAAGGTCGATGGTTTATTGCCGTTCTGATGCTGCCTGTTTGTGCTTATCATGCGATCGGAACGTCCACTCTGCGAACGCCCTCTCGAGGCGACACACAAGAACACTACTATGTGAAAAGTGCAATTTACAGCCTGCATTAGTAAGATGTGTTGAAGATGGAATCAATCTCTGTCAGAATTGTGATTGGCTGTGCCACAACTCGGCTACTTCTTCGTCGCATAAGAAGGAAACGATCAATTGCTACGCAGGCTGCCCATCGGCTTCTGAGCTTTCTTCTATTTGGTCATTTGTTTTAGATTTGCCGACTGTGGAAGACGCTTGTGAGCAAGAATTGGGATTAACGAGAGGCCATCAAGAAAATAATGCTTCTCGAGATGCATACGGCTTGGCGGATAAGTCAAGTATTTGGGTCGGCCCTTCTTTAATATCGACACTTAATTTTGCTCCACGGGGGTTCGAGCATTCTGGTGGATCCGTAAATATAAATTTTCCAAAGTTATACTGTCCCGGAACGAAAGATATCGAAACCTGCGAATTTGGCGATCTCTACGAGGATTTGGATTTGAGTCTCGAAAATTACGATGAACTGTTTGGCGTAGCCAATAATTCTGACGATCTTCTGGAGAATGGAGGGATCGATAGCTTGTTTGGGACGAAGGACATGTCTACTGCTGATTCCAACGCCCGTGCTGCTATTGCCACTGAGGATTTTAAAACATACTATTCTTTGCTATTATCGACTTCATTAGATTTCTCGATCTTCTCCGGATGTTATGTGCTGAACTTGAGTGTTCTTCTCAAGGTGTCTTCTGGTGGATTTATGAATACAATACAGCCAGCAAGCAGCAATGCTGCATCTGCAGATTCCATCATGAGTACTAAAACAGACTCAATTCTTTGTTGTAATACAAGGCAGCCACTCTCTCCTCTCCCATTTTCCGGGCCACCAGGAGAAATTAACAGCGGTGGAGATCATCCCGATTCTGGACTTTCGCCGATGCTTTTGATGGGGGAGCCTCCGTGGTGTCCACCCTGTCCCGACACTTCGTTCCAATCCTCTAATCGTAGCAATGCCGTTATGCGGTACATGGAGAAGAAAAAGACTCGAAAGTTCGAGAAAAAAGTCAGGTACGAGTCTCGAAAAGCAAGGGCGGACGTGAGGAGGCGTGTGAAGGGTCGGTTCATCAAAGCCGGAGATGCTTACGATTATGATCCGTTGTGCGAAACCAGAAGCTACTAG 1272 45.68 MGYMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCEKCNLQPALVRCVEDGINLCQNCDWLCHNSATSSSHKKETINCYAGCPSASELSSIWSFVLDLPTVEDACEQELGLTRGHQENNASRDAYGLADKSSIWVGPSLISTLNFAPRGFEHSGGSVNINFPKLYCPGTKDIETCEFGDLYEDLDLSLENYDELFGVANNSDDLLENGGIDSLFGTKDMSTADSNARAAIATEDFKTYYSLLLSTSLDFSIFSGCYVLNLSVLLKVSSGGFMNTIQPASSNAASADSIMSTKTDSILCCNTRQPLSPLPFSGPPGEINSGGDHPDSGLSPMLLMGEPPWCPPCPDTSFQSSNRSNAVMRYMEKKKTRKFEKKVRYESRKARADVRRRVKGRFIKAGDAYDYDPLCETRSY 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42107098 42108897 - Bma028039.2 Bma08g00690 87517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00690 423 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
Bma08g00690 423 SMART bboxneu5 48 89 IPR000315 GO:0008270
Bma08g00690 423 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bma08g00690 423 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bma08g00690 423 Pfam CCT motif 366 408 IPR010402 GO:0005515
Bma08g00690 423 CDD Bbox1_BBX-like 5 47 - -
Bma08g00690 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 278 423 - -
Bma08g00690 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 1 247 - -
Bma08g00690 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 278 423 - -
Bma08g00690 423 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 247 - -
Bma08g00690 423 ProSiteProfiles CCT domain profile. 366 408 IPR010402 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00690 Bma12g00873 CCT
Bma02g01294 Bma08g00690 CCT
Bma03g00658 Bma08g00690 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g01294 Bma-Chr2:55121467 Bma08g00690 Bma-Chr8:42107098 7.00E-139 dispersed
Bma08g00690 Bma-Chr8:42107098 Bma15g00012 Bma-Chr15:172318 1.62E-29 dispersed
Bma12g00873 Bma-Chr12:39803012 Bma08g00690 Bma-Chr8:42107098 1.04E-147 wgd
Bma03g00658 Bma-Chr3:5393850 Bma08g00690 Bma-Chr8:42107098 1.93E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57758 PF06203 CCT 2.80E-16 CL0281 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00690 - - jre:109000761 503.056