Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00700 ATGGCATCGAATCCTAGTGAGACGTGTGAAAAAACTGGTTCTAAATCTGAAACATCATCTACGGGGCTGCTGCCAACCTCTACCTCAGCCTCTTCCCCGGGTGCTGGGTTTCCTACCAACCCTTATGACTTCTCAGCCCTTAGTGGCCTGCTTAATGATCCTAACATTGAGCAAGCATCTGAAACATCCTCTGTGAAGCCACCTGCAGGCTCTTTCCCTGGTGCTGGGTTTCCTTCCAACTCTTTCAATTTGTCAGCCATGAGTGGCCTGCTTAATGATCCTAAAATTAAGGAATTGGCAGAGCAGATAGCAAAAGATCCTGCATTCAATCAAATGGCTTCGCAGCTGCAACAAACTTTTCAAGGATCAACAGTTGAGCAAGGAATCCCGCAGTATGATCCACAACAATATTTTTCCACAATGCAACAGGTCATGCAGAATCCTCAATTTATGTCTATGGCCGAGCAGCTTGGTAAAACATTAATTCAGAGTCCATCAATGTCTAGCGTGCTAGAGACTTTTGCAAATCCACCAGTTAATCAGCTTGAAGAACGAATGGCACGGATTAGAGACGATCCTTCCGTTAAGTCTATTTTGGAAGAGATAGAGAACAATGGCCCAGCTGCTATGATGAAGTACTGGAATGATAAAGACGTTATGCAGAAATTAGGTGAAGCAATGGGTCTCGCAGTTATTGAAGATGCAGAAGCTGCTGCTGACAACTCTGGCTTGAATGATTCCGAAGAACTGGTGAATGAAGACGAGTCAATAGTTCATAATTATGCTAGTGTTGGCGACGTTGAGGGATTGAAAGCTGCACTGGCTTCTGGTGCCAACAAGGACGAAGAAGATTCAGAAGGGAGAACAGCACTGCATTTTGCATGTGGCTATGGCGAGGTAAAGTGTGTTCAGATTCTGCTCGAGGCTGGAGCTGCTGTGGATGCTTTGGACAAGAACAAGAACACAGCACTTCATTATGCAGCCGGCTATGGCAGAAAGGAGTGTGTGGCTCTTCTGCTGGAGAATGGAGCTGCTGTCACCATCCAAAATATGGATGGAAAAACTCCGATTGATGTTGCGAAGCTAAACAACCAACACGAAGTAGTAAAACTACTTGAGAAGGATGCCTTCCTGTAA 1137 45.29 MASNPSETCEKTGSKSETSSTGLLPTSTSASSPGAGFPTNPYDFSALSGLLNDPNIEQASETSSVKPPAGSFPGAGFPSNSFNLSAMSGLLNDPKIKELAEQIAKDPAFNQMASQLQQTFQGSTVEQGIPQYDPQQYFSTMQQVMQNPQFMSMAEQLGKTLIQSPSMSSVLETFANPPVNQLEERMARIRDDPSVKSILEEIENNGPAAMMKYWNDKDVMQKLGEAMGLAVIEDAEAAADNSGLNDSEELVNEDESIVHNYASVGDVEGLKAALASGANKDEEDSEGRTALHFACGYGEVKCVQILLEAGAAVDALDKNKNTALHYAAGYGRKECVALLLENGAAVTIQNMDGKTPIDVAKLNNQHEVVKLLEKDAFL 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42416233 42419775 + Bma028054.1 Bma08g00700 87527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00700 378 ProSiteProfiles Ankyrin repeat region circular profile. 286 318 - -
Bma08g00700 378 ProSiteProfiles Ankyrin repeat region circular profile. 319 350 - -
Bma08g00700 378 Pfam Ankyrin repeats (3 copies) 262 350 IPR002110 GO:0005515
Bma08g00700 378 ProSiteProfiles Ankyrin repeat profile. 319 351 IPR002110 GO:0005515
Bma08g00700 378 SMART ANK_2a 253 282 IPR002110 GO:0005515
Bma08g00700 378 SMART ANK_2a 319 348 IPR002110 GO:0005515
Bma08g00700 378 SMART ANK_2a 286 315 IPR002110 GO:0005515
Bma08g00700 378 MobiDBLite consensus disorder prediction 1 38 - -
Bma08g00700 378 Pfam STI1 domain 185 228 IPR041243 -
Bma08g00700 378 SUPERFAMILY Ankyrin repeat 250 372 IPR036770 -
Bma08g00700 378 MobiDBLite consensus disorder prediction 1 50 - -
Bma08g00700 378 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 71 378 - -
Bma08g00700 378 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 29 67 - -
Bma08g00700 378 Gene3D - 246 323 IPR036770 -
Bma08g00700 378 Gene3D - 163 230 - -
Bma08g00700 378 PANTHER - 29 67 - -
Bma08g00700 378 PANTHER - 71 378 - -
Bma08g00700 378 ProSiteProfiles Ankyrin repeat profile. 286 318 IPR002110 GO:0005515
Bma08g00700 378 Gene3D - 324 375 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00700 - - - pvy:116145673 499.975
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00654 Bma08g00700 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00700 Bma-Chr8:42416233 Bma04g00693 Bma-Chr4:7027189 2.04E-08 dispersed
Bma08g00736 Bma-Chr8:43277522 Bma08g00700 Bma-Chr8:42416233 1.86E-13 transposed
Bma03g00654 Bma-Chr3:5359052 Bma08g00700 Bma-Chr8:42416233 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002762 0 3 2 2 2 2 2 1 1 1 2 1 1 2 2 1 1 3 2 1 2 2 2 2 2 2 2 7 3 1 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00700 Bma_Chr08 FPKM 9.711712 10.603737 26.02887 26.735943 15.137464 7.264483 17.760521 5.049293 4.424942 4.782256