Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00707 ATGGGCGATGCAGCAATGAGCAGTTCTTCATCAGGTCGGAGGCCTCGTGGTCGACCGGCGGGCTCCAAAAACAAACCTAAACCGCCGATATTTATCACTCGAGACAGCCCAAATGCTCTCAGATCCCACATTTTGGAAGTAGCTTCAGGCTCCGACATCGTCCAATCGGTTACAAACTACGCCCACAAGCGCGGTCGTGGAGTCTGCGTTCTCAGCGGGTCTGGCGGCGTCACTAACGTAATCCTCCGGCAGCCATCATCCCCATCAGGTGGTGTAATTACACTTCACGGCAGGTATGAGATATTATCACTAACCGGCACGGCATTGCCTCCTCCAGCGCCGCCTGGGGCTGGCGGCTTGACGGTATACTTGGCCGGAGGGCAAGGTCAGGTGGTCGGAGGAAGCGTCGTGGGACCACTAGTGGCTTGCGGCTCAGTGGTTCTGATGGCTGCTTCGTTTGCGAATGCAGTTTACGATCGGTTGCCAGTGGAGGACGAGGATCCAGGCATTCAGATTCCTCCAGCATCTGAAACTTCTGGGGTGACAAGCGGTGGAGCGCAAGTGGCCGGCGACGGGGGAAGTGGAACCAGTGGCGGAGGAGGCGTTCCCTTCCACAATCTAGGAGTGAACGTGGGAAATTATGGCTACCCTGGTGATCATGTTTTAGGGTGGAGTGGCTCTGTATCTGCATCAACATCGAGACCGCCATTTTAG 714 56.16 MGDAAMSSSSSGRRPRGRPAGSKNKPKPPIFITRDSPNALRSHILEVASGSDIVQSVTNYAHKRGRGVCVLSGSGGVTNVILRQPSSPSGGVITLHGRYEILSLTGTALPPPAPPGAGGLTVYLAGGQGQVVGGSVVGPLVACGSVVLMAASFANAVYDRLPVEDEDPGIQIPPASETSGVTSGGAQVAGDGGSGTSGGGGVPFHNLGVNVGNYGYPGDHVLGWSGSVSASTSRPPF 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42781882 42782595 - Bma028069.1 Bma08g00707 87534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00707 237 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 6 229 IPR014476 GO:0003680
Bma08g00707 237 SUPERFAMILY AF0104/ALDC/Ptd012-like 37 167 - -
Bma08g00707 237 MobiDBLite consensus disorder prediction 1 35 - -
Bma08g00707 237 MobiDBLite consensus disorder prediction 1 15 - -
Bma08g00707 237 Gene3D - 40 171 - -
Bma08g00707 237 CDD DUF296 41 107 IPR005175 -
Bma08g00707 237 MobiDBLite consensus disorder prediction 167 199 - -
Bma08g00707 237 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 25 6 229 - -
Bma08g00707 237 Pfam Plants and Prokaryotes Conserved (PCC) domain 41 154 IPR005175 -
Bma08g00707 237 ProSiteProfiles PPC domain profile profile. 37 173 IPR005175 -
Bma08g00707 237 PIRSF ESCAROLA 2 237 IPR014476 GO:0003680
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00707 Bma-Chr8:42781882 Bma06g01246 Bma-Chr6:49618595 1.53E-67 dispersed
Bma08g00707 Bma-Chr8:42781882 Bma02g01165 Bma-Chr2:53776721 2.05E-72 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00707 - - tcc:18608390 302.753