Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00714 ATGGTTTTGCTCGTTTTGTCATTTATTCTCTGCTTCTTAACACTCACAGAAGAGGTCTCCAGACCTGATGTTGTGAAAGTCGGGGCTATTATTACATTTGGCACCATTAATGGAGAAGTCTCGAAAATTGCATTGAAGGCTGCTGAAAATGATGTGAATTCTGATCCGAACATTCTTGGTGGAAGTAAATTGTCCATATCCATGTACAACTCCAACTTCAGCGGTTTTCTCGGAATTATTGGGGCATTAAACTACATGGAGTCTAATACTATAGCTATAATCGGTCCACAAAGCTCGGTTTTGGCGCATGCACTAGCCCATCTTGCAAATGAGCTTCACGTCCCCTTATTGTCATTTACAGCCCTCGACCCTGCTCTTTCTTCTTTACAGTATCCATACTTTGTTCAAACAGCTCCAAATGATAAGTTCCAGATGACCGCCATTGCAGATGTGATTAATTATTACGGTTGGCGCGAGGTTATTGCCATTTATAGTGATGATGATCAGAGCCGAAATGGTATAAGTGCATTAGGCGACAAGCTTGTGCAGAGAAGCTGCAGATTTTCCTACAAAGCAGCCCTTCCTCCTGACCCGACATCGACCAGGGTTCGAGTGCAGCACGAATTAATGAAAATTAAATTGATGGAAACTCGAGTAATTGTTCTGAACACCTTCAATACTACAGGTCTCTTGGTTTTTGACGTTGCCAAAAATCTGGGAATGATGGAGAGTGGGTATGTCTGGATTACTTCGACCTGGCTATCCACAGTTTTGGATTCAACTTCGCCACTTTCTACGAAGATTGCTGAGTCTGTCCAAGGTGTTCTCACACTTCGACCACACACCCCGGATACAAAAGAAAAAAGATCTTTCATCTCGCGTTGGAACAAACTTAGTAACGGCTCCATTGGATTGAATCCTTATGGTCTCTATGCATATGATACCGTTTGGATGATTGCTCATGCAGTGAAAAGGTTATTTGATCAAGGAGGTACTATTTCATTTTCCAATTCTGCATATTTTTGCAATCTTGGGGGAGGGACCATGAATTTTAGTGCTTTAAGCATATTTGATGAAGGAGAGCAATTGCTTAACAACATATTGAAGACCAATATGACTGGCCTGACAGGGCCTATTGAATTTACTTCAGACAGATCCTTTTTATACCCTTCCTATGACATTATAAACGTAATGAAAACAGGTTATCGACGAATTGGATACTGGTCTAACTATTCTGGATTGTCTGTTTTGCCTCCCGAGACATTTTATGGAAAACAATACAACCTTTCAAACCAATTTCTGAGCGATGTAATATGGTCTGGAGGTAAAACAACAAAACCTCGTGGATGGGTTTTTCGAAACAATGGGATGCCATTAAAAATTGGTGTTCCAAAGAGAGTTAGTTTTCGTGAGTTTGTCTCTCAAGTTAACGGCACCAGTGCAGTCCAAGGATATTGCATTGACGTTTTTCTTGCTGCCATAAAACTACTTCCTTATCCAGTTCCTTATGAATTTATTTTGGTTGGAGATGGTCGTGAAAATCCAAGCTACGATGAACTTGTAAATATGGTCACATCTGGGACCATTGATGGTGCTGTAGGTGATATTGCTATTGTCACAATGCGATCAAAGGCTGTGGATTTCACTCAACCTTATGCAGAGTCAGGGCTCGTGGTGGTGGCTCGAATCAAAAAGTTGAATTCTAGTGCTTGGGTATTTACGAGGCCATTTACGCTAATGATGTGGATGGTCATATTTCTTTTCTTTCTCATTATTGGAGCAGTTGTGTGGATTCTAGAACATAGAAGAAATGACGAGTTCCGAGGGCCACCTAGTAAACAAATTGCTACAATTTTCTGGTTTAGCTTCTGCACTATGTTTTTTGCTCATAGAGAAAATATGGTGAGCTCACTTGGTCGCATGGTGCTAATCGTCTGGCTCTTTGTCGTTCAAATCATCACCTCAAGCTACACTGCTAGCCTGACCTCAATACTCACAGTGCAACAGCTTTCCTCTCCCATCTCTGGAATTGAAACTTTAATAACTAGCGATGTGCCCATAGGATTCCAAGTTGGTTCTTTTGCAGAAAACTATTTGAACAAGGAGCTGGATATCCCAAAATCACGGCTTATCGCTCTTGGCTCCCCAGAGGAGTATGCTAATGCCCTCAATAGAGGAATCGTCGGTGCTGTGGTTGATGAAAAGTCATACATTGAACTCTTTCTGTCTGAATATTGCAAATTCTCTGTCAGAGGACAGGAGTTCACGAGAAGGGGTTGGGGATTTGCGTTTCCAAAAGAGTCGCCTTTGGCCGTTGATATATCCACTGCAATTCTCACGCTATCAGAAAATGGCAATCTTCAAAATATTCATGAAAAATGGTTTACAAGGAAAGGTTGCAGTGGTCAAAGCGCTGAAGTTGTCGATCATCTTCGTTTACGAAGCTTCGGGGGACTATTCATCGTTTGCATAGTTTCCGGTTTCCTTGCTTTATTTATACATTTCTGTATCATCTTCTACAAGTTCAGCCGATATAACTCAGAGGGCTCGAATTCTCCGATTGTACAAACCTCTCGCTCCCCCTGCCTTAAAGCTTTCATTTGCTTTATTGACAGAAAGGATGACGAGCAGGAAAGCAAGCCAAAACTCGAGCAGGTAGATGGAGAATAA 2670 41.61 MVLLVLSFILCFLTLTEEVSRPDVVKVGAIITFGTINGEVSKIALKAAENDVNSDPNILGGSKLSISMYNSNFSGFLGIIGALNYMESNTIAIIGPQSSVLAHALAHLANELHVPLLSFTALDPALSSLQYPYFVQTAPNDKFQMTAIADVINYYGWREVIAIYSDDDQSRNGISALGDKLVQRSCRFSYKAALPPDPTSTRVRVQHELMKIKLMETRVIVLNTFNTTGLLVFDVAKNLGMMESGYVWITSTWLSTVLDSTSPLSTKIAESVQGVLTLRPHTPDTKEKRSFISRWNKLSNGSIGLNPYGLYAYDTVWMIAHAVKRLFDQGGTISFSNSAYFCNLGGGTMNFSALSIFDEGEQLLNNILKTNMTGLTGPIEFTSDRSFLYPSYDIINVMKTGYRRIGYWSNYSGLSVLPPETFYGKQYNLSNQFLSDVIWSGGKTTKPRGWVFRNNGMPLKIGVPKRVSFREFVSQVNGTSAVQGYCIDVFLAAIKLLPYPVPYEFILVGDGRENPSYDELVNMVTSGTIDGAVGDIAIVTMRSKAVDFTQPYAESGLVVVARIKKLNSSAWVFTRPFTLMMWMVIFLFFLIIGAVVWILEHRRNDEFRGPPSKQIATIFWFSFCTMFFAHRENMVSSLGRMVLIVWLFVVQIITSSYTASLTSILTVQQLSSPISGIETLITSDVPIGFQVGSFAENYLNKELDIPKSRLIALGSPEEYANALNRGIVGAVVDEKSYIELFLSEYCKFSVRGQEFTRRGWGFAFPKESPLAVDISTAILTLSENGNLQNIHEKWFTRKGCSGQSAEVVDHLRLRSFGGLFIVCIVSGFLALFIHFCIIFYKFSRYNSEGSNSPIVQTSRSPCLKAFICFIDRKDDEQESKPKLEQVDGE 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 42929176 42933553 - Bma028076.1 Bma08g00714 87541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00714 889 CDD GluR_Plant 458 795 - -
Bma08g00714 889 Pfam Bacterial extracellular solute-binding proteins, family 3 479 796 IPR001638 -
Bma08g00714 889 SMART GluR_14 460 797 IPR001320 GO:0015276|GO:0016020
Bma08g00714 889 SUPERFAMILY Periplasmic binding protein-like II 437 797 - -
Bma08g00714 889 Gene3D - 43 389 - -
Bma08g00714 889 Gene3D - 570 700 - -
Bma08g00714 889 Gene3D - 140 414 - -
Bma08g00714 889 Pfam Receptor family ligand binding region 43 397 IPR001828 -
Bma08g00714 889 Pfam Ligand-gated ion channel 797 825 IPR001320 GO:0015276|GO:0016020
Bma08g00714 889 Gene3D - 721 802 - -
Bma08g00714 889 SUPERFAMILY Periplasmic binding protein-like I 20 450 IPR028082 -
Bma08g00714 889 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 10 879 - -
Bma08g00714 889 CDD PBP1_GABAb_receptor_plant 26 416 IPR044440 -
Bma08g00714 889 PIRSF IGluLR_plant 1 886 IPR017103 -
Bma08g00714 889 PANTHER GLUTAMATE RECEPTOR 3.3 10 879 - -
Bma08g00714 889 Gene3D - 453 569 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00714 Bma-Chr8:42929176 Bma12g00800 Bma-Chr12:37363190 0 dispersed
Bma08g00714 Bma-Chr8:42929176 Bma02g00328 Bma-Chr2:4485146 3.53E-75 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00714 K05387 - rcu:8270549 1242.64