Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00717 ATGGGTAAGGTAGTGGAGAGGACGAAGAAGAAGAAAGGACGGCCCTCTCTATTGGATCTTCAAAAACGCACAATCAAACAACTCCAGCACCAGCAGAATAATTCCTTCAATAACTCTCCCTCTCATTCCAACCCTAATTCCACAACTGCTACTGCCGTTCGGCGATCTACCCGCCGGAACCCCGTCCCCAATTCCCTCTCGCCGGAGGACGATTCCGAAGACCAAGGACACCCCGAAGACGATGAAGATTTTGACGGAAAGCGCCGCGAGAAGAAGCTCAAGCTTGTTCTTCGACTGCCCTCTCAGAAATCGTCTTTGAATTCGTCGTCTTTGAATTCTTCTGGCTCGGATTCGAATGCGGAGGTGGATGACGATGAGTCGGCTAAGAAGAAGCGAAAGATCAATGCAATCGGAGATGGATCTGGGCTCGGAAACCTCGAAAAGAGTGAAAAGTCTATTTCTGGTCCAAATACCACCAAACGCCTCCAAGGTTTGCTTTTGGATTTTGGACCTTCGACCCAATTACCGGATGAGAAGCTTTTACTGTTCGTCCTGGACAGACTTCAAAAGAAGGACACATATGGTGTGTTTTCTGAACCAGTGGACCCGGAAGAGCTTCCAGATTACCATGAAGTTATTGAGCACCCGATGGATTTTGCGACTGTAAGGAAGAAGCTTGCTAGCCGGGCTTATGCGAAAATGGAAGAGTTCGAGAAAGATGTTTTCTTAATCTGCTCAAACGCAATGAAGTACAATGCTCCGGATACTATCTACTTTAGGCAGGCGCGATCTATACAAGAATTGGCTAAAAAGAGCTTCAGGAATTTGAGACAAGATAGTGATGACAACGAGCCAGAGCCTAAAGTAGTCAGGAGAGGAAGGCCACCAACCAAGAATTTGAAACAGTCACAGGGACAGGCATTCTTTGAACGTGCTAGTTCAGAGTTCTCTGATGCTACCCTTGCCACGGGTGGAGAAAATACCAAGTATTATGATCTGCGAAAGGGACCTCATCAGTTGGAGAAATTTCCTGGTTCTCGCACTAATGATGCTAATACGAATTTGTTGGCTGAGAACAGATTTGAAAGAAATGATGATTTTCCTGGCTCTTTGTTGAAGAGTTACCCAACAAAGAATGGGAAAAAGCTAGTCATATTAGATGAAAACAAGCGCAACACATATACAGAATTCCGATTGTTGGCTGGTGGAAGAGAGCTACCAGTTATAAATACGTTTGCTAGAGAGAGAAAGCAACTAATGCCTGTGGGAATTAACACGGACAACGGTTATGCTAGAAGCCTTGCTCGATTTGCTGCTAATCTTGGCCCTCTTGCTTGGCAAGTTGCTTCTAAGAAGATTGAAAGATGTTTGCCTGCTGGAGTCAAGTTCGGCCGTGGTTGGGTTGTTGAAAACGATGTCATACCTTCTAGACCACTTCTATCACCATCAGCAGAAGGCCAAGTATCATTATTGCAGCCGATTCTTGGCCAGGATAGCTTATTTCCGGCAGCAGCAGCAGCTAGCACTCCTGATATTAAGGAGGTTAAATCACTCAAAATTCCGAACGAAAACATTGCCTCGGAGAAGCATAAGCCTCCAATGAGTTCTTGGTCAGATGGAAATCTTCCCAAAACTCCTTTTGAATCTGTCTACACGTCATCATCCCCTTTTGGTACTAAACAATCACCCGAACCTCTGACAGGAAAGGGTCATTACATTCTTAACAGCAGTGCAAATCCAGTTCAGCCAAAGCCTTCATTTCAGGTTCATAAAAGTCCTCTACAAACTGGTATGAATGGATATAGTAATGGTGCCTATGGCTTCCACCTGTCAGATCAGCTAGGAAAACTAATTGGATCAGCTGGAGTAAACTTGGAGTCATCTCAAATGGTTGACACAATCTCCAGAACTACTAACTCTGACTTCCACCATCCAGCAACTCCAAAAAATGTAATTCTGGCAAGTACCAGTAGAGTAAACCCAGGAAGTTCATTATCTAAACATGATGAGGCATTGACACCTCAGACCAAGGTTGAATCAGTTCCTCCGGATCTTAATGTCGGATTTCAGTCTCCAGGATCGCCGATCTGTACCCGAGTCGACTTGGCTACACATCCTGACTTAGCATTGCAGCTCTGA 2139 45.07 MGKVVERTKKKKGRPSLLDLQKRTIKQLQHQQNNSFNNSPSHSNPNSTTATAVRRSTRRNPVPNSLSPEDDSEDQGHPEDDEDFDGKRREKKLKLVLRLPSQKSSLNSSSLNSSGSDSNAEVDDDESAKKKRKINAIGDGSGLGNLEKSEKSISGPNTTKRLQGLLLDFGPSTQLPDEKLLLFVLDRLQKKDTYGVFSEPVDPEELPDYHEVIEHPMDFATVRKKLASRAYAKMEEFEKDVFLICSNAMKYNAPDTIYFRQARSIQELAKKSFRNLRQDSDDNEPEPKVVRRGRPPTKNLKQSQGQAFFERASSEFSDATLATGGENTKYYDLRKGPHQLEKFPGSRTNDANTNLLAENRFERNDDFPGSLLKSYPTKNGKKLVILDENKRNTYTEFRLLAGGRELPVINTFARERKQLMPVGINTDNGYARSLARFAANLGPLAWQVASKKIERCLPAGVKFGRGWVVENDVIPSRPLLSPSAEGQVSLLQPILGQDSLFPAAAAASTPDIKEVKSLKIPNENIASEKHKPPMSSWSDGNLPKTPFESVYTSSSPFGTKQSPEPLTGKGHYILNSSANPVQPKPSFQVHKSPLQTGMNGYSNGAYGFHLSDQLGKLIGSAGVNLESSQMVDTISRTTNSDFHHPATPKNVILASTSRVNPGSSLSKHDEALTPQTKVESVPPDLNVGFQSPGSPICTRVDLATHPDLALQL 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43014428 43019168 + Bma028081.1 Bma08g00717 87544

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00717 712 MobiDBLite consensus disorder prediction 274 293 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 22 69 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 523 542 - -
Bma08g00717 712 CDD Bromodomain 177 271 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 548 562 - -
Bma08g00717 712 Gene3D - 174 292 IPR036427 GO:0005515
Bma08g00717 712 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 712 - -
Bma08g00717 712 Pfam Bromodomain 184 263 IPR001487 GO:0005515
Bma08g00717 712 ProSiteProfiles Bromodomain profile. 189 259 IPR001487 GO:0005515
Bma08g00717 712 MobiDBLite consensus disorder prediction 274 305 - -
Bma08g00717 712 ProSitePatterns Bromodomain signature. 195 251 IPR018359 -
Bma08g00717 712 PRINTS Bromodomain signature 222 240 IPR001487 GO:0005515
Bma08g00717 712 PRINTS Bromodomain signature 192 205 IPR001487 GO:0005515
Bma08g00717 712 PRINTS Bromodomain signature 240 259 IPR001487 GO:0005515
Bma08g00717 712 PRINTS Bromodomain signature 206 222 IPR001487 GO:0005515
Bma08g00717 712 MobiDBLite consensus disorder prediction 658 687 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 122 136 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 81 97 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 548 585 - -
Bma08g00717 712 SUPERFAMILY Bromodomain 173 282 IPR036427 GO:0005515
Bma08g00717 712 SMART bromo_6 170 278 IPR001487 GO:0005515
Bma08g00717 712 MobiDBLite consensus disorder prediction 100 118 - -
Bma08g00717 712 MobiDBLite consensus disorder prediction 1 157 - -
Bma08g00717 712 PANTHER BROMODOMAIN AND WD REPEAT-CONTAINING PROTEIN 1-LIKE 1 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00717 K22184 BRD9; bromodomain-containing protein 9 - qsu:111985563 718.768
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00637 Bma08g00717 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00289 Bma-Chr4:2327480 Bma08g00717 Bma-Chr8:43014428 1.19E-116 dispersed
Bma08g00717 Bma-Chr8:43014428 Bma10g00553 Bma-Chr10:6691174 8.47E-86 dispersed
Bma03g00637 Bma-Chr3:5268865 Bma08g00717 Bma-Chr8:43014428 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g294 . . . . . Bpe12g00149 . . Cmo19g00818 Cmo11g01786 . . . . . Cpe04g00631 Cpe15g00642 Bhi05g01248 Tan02g0781 . . . . . Cla02g00347 Cam02g0356 Cec02g0357 Cco02g0363 Clacu02g0348 Cmu02g0345 Cre02g0677 . . . . . Csa07g00186 . Cme01g01147 Blo04g00606 Blo13g00473 . Bda14g00648 Bpe15g00784 . Bma03g00637 Bma08g00717 . . . Cma11g01333 Cma19g00798 Car11g01413 Car19g00614 . . . . . . . . . . . . . . . . Lsi11g01285 . Chy01g00594 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005813 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00717 Bma_Chr08 FPKM 0.0 0.0 4.240398 3.844048 150.8237 133.089447 151.989365 2.032393 1.099193 0.941981